Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4890
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
5,069 | + | +0.3 | |||
5,080 | + | +0.2 | |||
5,080 | + | +0.6 | |||
5,081 | - | +0.0 | |||
5,081 | - | +0.3 | |||
5,082 | + | +0.5 | |||
5,083 | - | +0.3 | |||
5,083 | - | -0.4 | |||
5,083 | - | +0.0 | |||
5,113 | - | -0.6 | |||
5,135 | - | +0.0 | |||
5,168 | - | -0.7 | |||
5,470 | + | GFF4889 | 0.38 | +0.1 | |
5,558 | + | GFF4889 | 0.51 | +1.3 | |
5,788 | - | GFF4889 | 0.84 | +0.2 | |
5,941 | + | +0.2 | |||
5,949 | + | +0.5 | |||
6,122 | + | GFF4890 | 0.10 | -1.6 | |
6,274 | + | GFF4890 | 0.19 | -2.9 | |
6,274 | + | GFF4890 | 0.19 | -2.7 | |
6,887 | + | GFF4890 | 0.55 | -2.5 | |
6,887 | + | GFF4890 | 0.55 | -1.6 | |
6,888 | - | GFF4890 | 0.55 | -3.0 | |
6,888 | - | GFF4890 | 0.55 | -1.1 | |
7,204 | + | GFF4890 | 0.73 | -0.3 | |
7,358 | + | GFF4890 | 0.82 | -0.0 | |
7,359 | - | GFF4890 | 0.82 | -0.6 | |
7,377 | + | GFF4890 | 0.83 | -1.9 | |
7,492 | + | GFF4890 | 0.90 | -0.9 | |
7,493 | - | GFF4890 | 0.90 | -1.1 | |
7,495 | - | GFF4890 | 0.90 | -1.3 | |
7,495 | - | GFF4890 | 0.90 | -2.8 | |
7,617 | - | -1.6 | |||
7,627 | + | -1.6 | |||
7,651 | - | -0.4 | |||
7,672 | - | -2.4 | |||
7,672 | - | +0.9 | |||
8,012 | + | GFF4891 | 0.19 | -1.7 | |
8,108 | + | GFF4891 | 0.25 | -1.4 | |
8,136 | - | GFF4891 | 0.26 | -2.2 | |
8,233 | - | GFF4891 | 0.32 | -0.6 | |
8,249 | + | GFF4891 | 0.33 | -4.2 | |
8,252 | + | GFF4891 | 0.33 | +0.7 | |
8,369 | - | GFF4891 | 0.40 | -2.2 | |
8,372 | - | GFF4891 | 0.40 | +1.1 | |
8,372 | - | GFF4891 | 0.40 | -1.3 | |
8,372 | - | GFF4891 | 0.40 | -2.9 | |
8,372 | - | GFF4891 | 0.40 | -2.7 | |
8,470 | + | GFF4891 | 0.45 | -3.4 | |
8,497 | + | GFF4891 | 0.47 | -1.6 | |
8,506 | - | GFF4891 | 0.47 | -0.6 | |
8,657 | - | GFF4891 | 0.56 | +0.1 |
Or see this region's nucleotide sequence