Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4885 and GFF4886 are separated by 19 nucleotides GFF4886 and GFF4887 are separated by 108 nucleotides GFF4887 and GFF4888 are separated by 90 nucleotides GFF4888 and GFF4889 are separated by 311 nucleotides
GFF4885 - Nicotinamidase family protein YcaC, at 2,001 to 2,678
GFF4885
GFF4886 - FIG01046265: hypothetical protein, at 2,698 to 3,558
GFF4886
GFF4887 - Transcriptional regulator, LysR family, at 3,667 to 4,578
GFF4887
GFF4888 - Translation initiation factor 1, at 4,669 to 4,887
GFF4888
GFF4889 - Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6), at 5,199 to 5,903
GFF4889
Position (kb) 3
4
5 Strain fitness (log2 ratio) -1
0
1 at 2.766 kb on + strand at 2.825 kb on - strand, within GFF4886 at 2.980 kb on - strand, within GFF4886 at 2.980 kb on - strand, within GFF4886 at 3.006 kb on + strand, within GFF4886 at 3.339 kb on + strand, within GFF4886 at 3.342 kb on - strand, within GFF4886 at 3.537 kb on - strand at 3.602 kb on - strand at 3.868 kb on + strand, within GFF4887 at 3.879 kb on + strand, within GFF4887 at 3.880 kb on - strand, within GFF4887 at 3.986 kb on + strand, within GFF4887 at 3.986 kb on + strand, within GFF4887 at 4.332 kb on + strand, within GFF4887 at 4.406 kb on + strand, within GFF4887 at 4.512 kb on - strand at 4.523 kb on + strand at 4.523 kb on + strand at 4.600 kb on + strand at 4.637 kb on - strand at 5.069 kb on + strand at 5.080 kb on + strand at 5.080 kb on + strand at 5.081 kb on - strand at 5.081 kb on - strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.113 kb on - strand at 5.135 kb on - strand at 5.168 kb on - strand at 5.470 kb on + strand, within GFF4889 at 5.558 kb on + strand, within GFF4889
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,766 + +0.6 2,825 - GFF4886 0.15 -0.0 2,980 - GFF4886 0.33 +0.1 2,980 - GFF4886 0.33 +0.0 3,006 + GFF4886 0.36 +0.6 3,339 + GFF4886 0.74 -0.0 3,342 - GFF4886 0.75 -0.0 3,537 - -1.5 3,602 - +0.0 3,868 + GFF4887 0.22 +0.3 3,879 + GFF4887 0.23 -1.4 3,880 - GFF4887 0.23 +0.7 3,986 + GFF4887 0.35 +1.6 3,986 + GFF4887 0.35 +0.6 4,332 + GFF4887 0.73 +0.0 4,406 + GFF4887 0.81 -0.2 4,512 - -1.0 4,523 + +0.7 4,523 + -0.5 4,600 + +0.3 4,637 - -0.1 5,069 + +0.3 5,080 + +0.2 5,080 + +0.6 5,081 - +0.0 5,081 - +0.3 5,082 + +0.5 5,083 - +0.3 5,083 - -0.4 5,083 - +0.0 5,113 - -0.6 5,135 - +0.0 5,168 - -0.7 5,470 + GFF4889 0.38 +0.1 5,558 + GFF4889 0.51 +1.3
Or see this region's nucleotide sequence