Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4863 and GFF4864 overlap by 8 nucleotides GFF4864 and GFF4865 are separated by 18 nucleotides GFF4865 and GFF4866 are separated by 346 nucleotides GFF4866 and GFF4867 are separated by 192 nucleotides
GFF4863 - 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11, at 162,730 to 163,830
GFF4863
GFF4864 - COG2363, at 163,823 to 164,218
GFF4864
GFF4865 - Glycine cleavage system transcriptional activator GcvA, at 164,237 to 165,154
GFF4865
GFF4866 - probable lipoprotein, at 165,501 to 165,728
GFF4866
GFF4867 - Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA, at 165,921 to 167,126
GFF4867
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 163.314 kb on + strand, within GFF4863 at 163.356 kb on - strand, within GFF4863 at 163.356 kb on - strand, within GFF4863 at 163.492 kb on - strand, within GFF4863 at 163.691 kb on + strand, within GFF4863 at 163.701 kb on - strand, within GFF4863 at 163.817 kb on - strand at 163.824 kb on + strand at 163.824 kb on + strand at 163.844 kb on - strand at 163.852 kb on + strand at 164.173 kb on + strand, within GFF4864 at 164.174 kb on - strand, within GFF4864 at 164.203 kb on + strand at 164.225 kb on - strand at 164.229 kb on + strand at 164.352 kb on + strand, within GFF4865 at 164.429 kb on - strand, within GFF4865 at 164.435 kb on - strand, within GFF4865 at 164.495 kb on - strand, within GFF4865 at 164.495 kb on - strand, within GFF4865 at 164.499 kb on - strand, within GFF4865 at 164.518 kb on + strand, within GFF4865 at 164.521 kb on + strand, within GFF4865 at 164.545 kb on + strand, within GFF4865 at 164.547 kb on + strand, within GFF4865 at 164.548 kb on - strand, within GFF4865 at 164.582 kb on + strand, within GFF4865 at 164.661 kb on - strand, within GFF4865 at 164.807 kb on - strand, within GFF4865 at 164.899 kb on + strand, within GFF4865 at 164.936 kb on - strand, within GFF4865 at 165.656 kb on - strand, within GFF4866 at 165.696 kb on - strand, within GFF4866 at 165.755 kb on + strand at 165.820 kb on - strand at 165.823 kb on + strand at 165.838 kb on + strand at 165.838 kb on + strand at 165.857 kb on + strand at 165.871 kb on + strand at 166.113 kb on + strand, within GFF4867 at 166.147 kb on + strand, within GFF4867
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 163,314 + GFF4863 0.53 -0.3 163,356 - GFF4863 0.57 -0.2 163,356 - GFF4863 0.57 +0.5 163,492 - GFF4863 0.69 -1.3 163,691 + GFF4863 0.87 -0.6 163,701 - GFF4863 0.88 -0.2 163,817 - +0.1 163,824 + -0.1 163,824 + +0.7 163,844 - +0.2 163,852 + +0.1 164,173 + GFF4864 0.88 +0.2 164,174 - GFF4864 0.89 +0.2 164,203 + -0.7 164,225 - +0.4 164,229 + +0.6 164,352 + GFF4865 0.13 -0.6 164,429 - GFF4865 0.21 -0.6 164,435 - GFF4865 0.22 -0.4 164,495 - GFF4865 0.28 -0.9 164,495 - GFF4865 0.28 +1.0 164,499 - GFF4865 0.29 +0.1 164,518 + GFF4865 0.31 -1.8 164,521 + GFF4865 0.31 -1.5 164,545 + GFF4865 0.34 -2.0 164,547 + GFF4865 0.34 -0.6 164,548 - GFF4865 0.34 -1.1 164,582 + GFF4865 0.38 -0.2 164,661 - GFF4865 0.46 -1.0 164,807 - GFF4865 0.62 -2.5 164,899 + GFF4865 0.72 -0.8 164,936 - GFF4865 0.76 -1.2 165,656 - GFF4866 0.68 -0.6 165,696 - GFF4866 0.86 +0.2 165,755 + +0.0 165,820 - -0.1 165,823 + +0.1 165,838 + -0.4 165,838 + -0.4 165,857 + +0.4 165,871 + +0.3 166,113 + GFF4867 0.16 +0.3 166,147 + GFF4867 0.19 +0.1
Or see this region's nucleotide sequence