Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF484 and GFF485 overlap by 4 nucleotides GFF485 and GFF486 overlap by 4 nucleotides GFF486 and GFF487 are separated by 32 nucleotides GFF487 and GFF488 are separated by 110 nucleotides GFF488 and GFF489 are separated by 0 nucleotides
GFF484 - FIG002337: predicted inner membrane protein, at 204,979 to 206,658
GFF484
GFF485 - FIG005119: putative inner membrane protein, at 206,655 to 206,846
GFF485
GFF486 - FIG005274: hypothetical protein, at 206,843 to 208,402
GFF486
GFF487 - hypothetical protein, at 208,435 to 208,548
GFF487
GFF488 - FIG004405: Putative cytoplasmic protein, at 208,659 to 208,862
GFF488
GFF489 - Cellulose synthase, putative, at 208,863 to 209,615
GFF489
Position (kb) 206
207
208
209 Strain fitness (log2 ratio) -1
0
1 at 205.880 kb on - strand, within GFF484 at 205.935 kb on + strand, within GFF484 at 206.018 kb on + strand, within GFF484 at 206.019 kb on - strand, within GFF484 at 206.219 kb on - strand, within GFF484 at 206.263 kb on + strand, within GFF484 at 206.386 kb on - strand, within GFF484 at 206.486 kb on - strand, within GFF484 at 206.609 kb on + strand at 206.709 kb on + strand, within GFF485 at 206.710 kb on - strand, within GFF485 at 206.731 kb on - strand, within GFF485 at 206.745 kb on - strand, within GFF485 at 206.928 kb on - strand at 206.987 kb on + strand at 206.988 kb on - strand at 207.079 kb on + strand, within GFF486 at 207.157 kb on + strand, within GFF486 at 207.158 kb on - strand, within GFF486 at 207.186 kb on - strand, within GFF486 at 207.192 kb on - strand, within GFF486 at 207.283 kb on + strand, within GFF486 at 207.284 kb on - strand, within GFF486 at 207.413 kb on - strand, within GFF486 at 207.511 kb on + strand, within GFF486 at 207.604 kb on + strand, within GFF486 at 207.815 kb on + strand, within GFF486 at 208.049 kb on + strand, within GFF486 at 208.166 kb on - strand, within GFF486 at 208.203 kb on - strand, within GFF486 at 208.949 kb on - strand, within GFF489 at 209.080 kb on + strand, within GFF489 at 209.085 kb on + strand, within GFF489 at 209.086 kb on - strand, within GFF489 at 209.087 kb on + strand, within GFF489 at 209.087 kb on + strand, within GFF489 at 209.088 kb on - strand, within GFF489 at 209.216 kb on + strand, within GFF489 at 209.216 kb on + strand, within GFF489 at 209.217 kb on - strand, within GFF489 at 209.288 kb on + strand, within GFF489 at 209.398 kb on + strand, within GFF489
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 205,880 - GFF484 0.54 -0.8 205,935 + GFF484 0.57 -0.1 206,018 + GFF484 0.62 +1.6 206,019 - GFF484 0.62 -0.1 206,219 - GFF484 0.74 +0.1 206,263 + GFF484 0.76 +0.4 206,386 - GFF484 0.84 +0.5 206,486 - GFF484 0.90 +0.2 206,609 + -0.0 206,709 + GFF485 0.28 -0.2 206,710 - GFF485 0.29 +0.2 206,731 - GFF485 0.40 -0.9 206,745 - GFF485 0.47 -0.2 206,928 - +0.1 206,987 + +0.2 206,988 - +0.3 207,079 + GFF486 0.15 -0.4 207,157 + GFF486 0.20 +0.3 207,158 - GFF486 0.20 -0.4 207,186 - GFF486 0.22 +0.1 207,192 - GFF486 0.22 +0.2 207,283 + GFF486 0.28 -0.2 207,284 - GFF486 0.28 +0.3 207,413 - GFF486 0.37 +0.6 207,511 + GFF486 0.43 +0.1 207,604 + GFF486 0.49 +1.3 207,815 + GFF486 0.62 +0.0 208,049 + GFF486 0.77 +0.2 208,166 - GFF486 0.85 +0.3 208,203 - GFF486 0.87 +0.9 208,949 - GFF489 0.11 -0.0 209,080 + GFF489 0.29 -1.6 209,085 + GFF489 0.29 +0.1 209,086 - GFF489 0.30 +0.6 209,087 + GFF489 0.30 +0.2 209,087 + GFF489 0.30 +0.5 209,088 - GFF489 0.30 -0.4 209,216 + GFF489 0.47 -0.6 209,216 + GFF489 0.47 -0.8 209,217 - GFF489 0.47 +0.8 209,288 + GFF489 0.56 -0.2 209,398 + GFF489 0.71 +0.6
Or see this region's nucleotide sequence