Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4728 and GFF4729 overlap by 4 nucleotides GFF4729 and GFF4730 overlap by 10 nucleotides GFF4730 and GFF4731 are separated by 98 nucleotides
GFF4728 - Manganese ABC transporter, ATP-binding protein SitB, at 37,065 to 37,886
GFF4728
GFF4729 - Manganese ABC transporter, inner membrane permease protein SitC, at 37,883 to 38,743
GFF4729
GFF4730 - Manganese ABC transporter, inner membrane permease protein SitD, at 38,734 to 39,582
GFF4730
GFF4731 - Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation), at 39,681 to 40,547
GFF4731
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 38.030 kb on - strand, within GFF4729 at 38.117 kb on - strand, within GFF4729 at 38.171 kb on - strand, within GFF4729 at 38.441 kb on - strand, within GFF4729 at 38.596 kb on + strand, within GFF4729 at 38.597 kb on - strand, within GFF4729 at 38.601 kb on - strand, within GFF4729 at 38.775 kb on + strand at 38.825 kb on + strand, within GFF4730 at 38.825 kb on + strand, within GFF4730 at 38.847 kb on - strand, within GFF4730 at 38.911 kb on + strand, within GFF4730 at 38.911 kb on + strand, within GFF4730 at 38.912 kb on - strand, within GFF4730 at 38.913 kb on + strand, within GFF4730 at 38.914 kb on - strand, within GFF4730 at 38.914 kb on - strand, within GFF4730 at 39.065 kb on - strand, within GFF4730 at 39.114 kb on + strand, within GFF4730 at 39.182 kb on + strand, within GFF4730 at 39.268 kb on + strand, within GFF4730 at 39.279 kb on - strand, within GFF4730 at 39.282 kb on + strand, within GFF4730 at 39.298 kb on - strand, within GFF4730 at 39.612 kb on - strand at 39.612 kb on - strand at 39.811 kb on - strand, within GFF4731 at 39.845 kb on - strand, within GFF4731 at 39.873 kb on - strand, within GFF4731 at 40.431 kb on - strand, within GFF4731
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 38,030 - GFF4729 0.17 -0.0 38,117 - GFF4729 0.27 -0.3 38,171 - GFF4729 0.33 +0.1 38,441 - GFF4729 0.65 +0.2 38,596 + GFF4729 0.83 +0.4 38,597 - GFF4729 0.83 +0.5 38,601 - GFF4729 0.83 +1.2 38,775 + +0.3 38,825 + GFF4730 0.11 -0.7 38,825 + GFF4730 0.11 +0.1 38,847 - GFF4730 0.13 -0.0 38,911 + GFF4730 0.21 -0.3 38,911 + GFF4730 0.21 -0.1 38,912 - GFF4730 0.21 +0.3 38,913 + GFF4730 0.21 +0.0 38,914 - GFF4730 0.21 -0.4 38,914 - GFF4730 0.21 -0.1 39,065 - GFF4730 0.39 -0.3 39,114 + GFF4730 0.45 -0.2 39,182 + GFF4730 0.53 -1.0 39,268 + GFF4730 0.63 +0.3 39,279 - GFF4730 0.64 -0.1 39,282 + GFF4730 0.65 -0.8 39,298 - GFF4730 0.66 -0.2 39,612 - -2.7 39,612 - -0.5 39,811 - GFF4731 0.15 +0.4 39,845 - GFF4731 0.19 +0.4 39,873 - GFF4731 0.22 -0.1 40,431 - GFF4731 0.87 +0.5
Or see this region's nucleotide sequence