Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF471 and GFF472 overlap by 17 nucleotides GFF472 and GFF473 are separated by 52 nucleotides GFF473 and GFF474 are separated by 57 nucleotides
GFF471 - Putative lacI-family transcriptional regulator, at 192,829 to 193,836
GFF471
GFF472 - hypothetical protein, at 193,820 to 193,933
GFF472
GFF473 - Putative PQQ enzyme repeat, at 193,986 to 195,110
GFF473
GFF474 - Xanthine permease, at 195,168 to 196,493
GFF474
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.129 kb on + strand, within GFF471 at 193.130 kb on - strand, within GFF471 at 193.130 kb on - strand, within GFF471 at 193.130 kb on - strand, within GFF471 at 193.274 kb on - strand, within GFF471 at 193.572 kb on + strand, within GFF471 at 193.573 kb on - strand, within GFF471 at 193.683 kb on - strand, within GFF471 at 193.876 kb on + strand, within GFF472 at 194.043 kb on - strand at 194.043 kb on - strand at 194.047 kb on - strand at 194.047 kb on - strand at 194.047 kb on - strand at 194.079 kb on - strand at 194.116 kb on - strand, within GFF473 at 194.211 kb on + strand, within GFF473 at 194.211 kb on + strand, within GFF473 at 194.280 kb on + strand, within GFF473 at 194.281 kb on - strand, within GFF473 at 194.325 kb on - strand, within GFF473 at 194.325 kb on - strand, within GFF473 at 194.328 kb on + strand, within GFF473 at 194.373 kb on + strand, within GFF473 at 194.374 kb on - strand, within GFF473 at 194.664 kb on - strand, within GFF473 at 194.838 kb on - strand, within GFF473 at 194.885 kb on + strand, within GFF473 at 194.924 kb on + strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.990 kb on + strand, within GFF473 at 194.990 kb on + strand, within GFF473 at 195.029 kb on + strand at 195.029 kb on + strand at 195.079 kb on - strand at 195.112 kb on - strand at 195.154 kb on + strand at 195.154 kb on + strand at 195.163 kb on + strand at 195.163 kb on + strand at 195.163 kb on + strand at 195.164 kb on - strand at 195.208 kb on + strand at 195.227 kb on - strand at 195.273 kb on - strand at 195.309 kb on - strand, within GFF474 at 195.416 kb on + strand, within GFF474 at 195.417 kb on - strand, within GFF474 at 195.419 kb on + strand, within GFF474 at 195.592 kb on + strand, within GFF474 at 195.678 kb on - strand, within GFF474 at 195.698 kb on + strand, within GFF474 at 195.967 kb on + strand, within GFF474 at 196.064 kb on - strand, within GFF474
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 193,129 + GFF471 0.30 +0.0 193,130 - GFF471 0.30 -1.4 193,130 - GFF471 0.30 -0.6 193,130 - GFF471 0.30 -2.0 193,274 - GFF471 0.44 +0.3 193,572 + GFF471 0.74 +0.0 193,573 - GFF471 0.74 -0.1 193,683 - GFF471 0.85 +0.7 193,876 + GFF472 0.49 -0.1 194,043 - +0.3 194,043 - -0.4 194,047 - +0.4 194,047 - +0.5 194,047 - -0.1 194,079 - +0.3 194,116 - GFF473 0.12 +1.1 194,211 + GFF473 0.20 +1.0 194,211 + GFF473 0.20 -0.1 194,280 + GFF473 0.26 +1.9 194,281 - GFF473 0.26 +0.5 194,325 - GFF473 0.30 -0.8 194,325 - GFF473 0.30 -0.7 194,328 + GFF473 0.30 +0.6 194,373 + GFF473 0.34 -0.0 194,374 - GFF473 0.34 +0.9 194,664 - GFF473 0.60 -0.1 194,838 - GFF473 0.76 +0.4 194,885 + GFF473 0.80 +0.2 194,924 + GFF473 0.83 +0.4 194,989 - GFF473 0.89 -0.1 194,989 - GFF473 0.89 -0.2 194,989 - GFF473 0.89 +0.1 194,990 + GFF473 0.89 +0.2 194,990 + GFF473 0.89 -0.2 195,029 + +0.2 195,029 + +0.3 195,079 - -0.3 195,112 - +0.4 195,154 + -1.4 195,154 + -0.2 195,163 + +0.6 195,163 + -0.4 195,163 + +0.4 195,164 - +0.1 195,208 + -0.3 195,227 - -0.2 195,273 - +0.4 195,309 - GFF474 0.11 +0.8 195,416 + GFF474 0.19 +0.2 195,417 - GFF474 0.19 -0.9 195,419 + GFF474 0.19 +0.2 195,592 + GFF474 0.32 -0.1 195,678 - GFF474 0.38 -0.5 195,698 + GFF474 0.40 +0.6 195,967 + GFF474 0.60 -0.2 196,064 - GFF474 0.68 -0.3
Or see this region's nucleotide sequence