Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4679

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
7,755	+				+0.1
7,756	-				-1.9
7,805	+		GFF4677	0.10	-0.0
7,991	+		GFF4677	0.43	+0.3
7,992	-		GFF4677	0.43	+0.3
7,992	-		GFF4677	0.43	+0.5
8,068	+		GFF4677	0.56	+0.3
8,069	-		GFF4677	0.57	+0.1
8,069	-		GFF4677	0.57	+0.2
8,076	+		GFF4677	0.58	-0.1
8,082	+		GFF4677	0.59	+0.2
8,176	+		GFF4677	0.75	+0.2
8,441	-		GFF4678	0.32	+0.1
8,458	+		GFF4678	0.37	-0.1
8,502	-		GFF4678	0.48	+0.2
8,514	-		GFF4678	0.50	+0.2
8,637	+		GFF4678	0.81	+0.2
8,637	+		GFF4678	0.81	+0.0
8,637	+		GFF4678	0.81	-0.4
8,638	-		GFF4678	0.81	-0.1
8,638	-		GFF4678	0.81	+0.8
8,641	+		GFF4678	0.82	-0.1
8,701	+				-0.6
8,701	+				-0.3
8,702	-				-0.2
8,791	-				-0.0
8,791	-				+0.0
8,834	+		GFF4679	0.15	+0.2
8,901	-		GFF4679	0.24	+0.5
8,904	-		GFF4679	0.24	+0.4
8,904	-		GFF4679	0.24	+0.2
9,180	+		GFF4679	0.61	+0.2
9,181	-		GFF4679	0.61	+0.5
9,213	-		GFF4679	0.65	-0.0
9,382	+		GFF4679	0.88	-0.1
9,392	+		GFF4679	0.89	+0.1
9,514	-				+0.4
9,514	-				-0.2
9,593	+		GFF4680	0.19	+0.4
9,594	-		GFF4680	0.19	-0.2
9,623	+		GFF4680	0.26	-0.6
9,634	-		GFF4680	0.29	+0.1
9,681	+		GFF4680	0.41	-0.5
9,681	+		GFF4680	0.41	+0.2
9,682	-		GFF4680	0.41	+0.8
9,682	-		GFF4680	0.41	+0.2
10,268	+				-0.5
10,460	+				+0.7