Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4641

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4640 and GFF4641 are separated by 141 nucleotidesGFF4641 and GFF4642 overlap by 1 nucleotidesGFF4642 and GFF4643 are separated by 28 nucleotides GFF4640 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 435,105 to 436,313 GFF4640 GFF4641 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 436,455 to 437,621 GFF4641 GFF4642 - Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5), at 437,621 to 438,490 GFF4642 GFF4643 - hypothetical protein, at 438,519 to 438,644 GFF4643 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1at 435.882 kb on + strand, within GFF4640at 436.334 kb on + strandat 436.382 kb on - strandat 436.463 kb on - strandat 436.522 kb on - strandat 436.529 kb on + strandat 436.529 kb on + strandat 436.704 kb on + strand, within GFF4641at 437.064 kb on - strand, within GFF4641at 437.283 kb on - strand, within GFF4641at 437.367 kb on - strand, within GFF4641at 437.620 kb on - strandat 437.636 kb on - strandat 437.645 kb on - strandat 438.095 kb on + strand, within GFF4642at 438.096 kb on - strand, within GFF4642at 438.572 kb on + strand, within GFF4643

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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435,882 + GFF4640 0.64 -1.8
436,334 + -1.5
436,382 - -0.8
436,463 - -2.0
436,522 - -1.7
436,529 + -1.5
436,529 + -1.3
436,704 + GFF4641 0.21 -3.1
437,064 - GFF4641 0.52 -0.8
437,283 - GFF4641 0.71 -1.1
437,367 - GFF4641 0.78 -2.0
437,620 - -0.3
437,636 - -1.6
437,645 - -0.5
438,095 + GFF4642 0.54 -2.1
438,096 - GFF4642 0.55 -1.7
438,572 + GFF4643 0.42 -0.3

Or see this region's nucleotide sequence