Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF462 and GFF463 overlap by 23 nucleotides GFF463 and GFF464 are separated by 156 nucleotides GFF464 and GFF465 are separated by 517 nucleotides
GFF462 - Acetyltransferase (EC 2.3.1.-), at 182,727 to 183,167
GFF462
GFF463 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 183,145 to 183,726
GFF463
GFF464 - FIG00543870: hypothetical protein, at 183,883 to 184,587
GFF464
GFF465 - Long polar fimbria protein A precursor, at 185,105 to 185,629
GFF465
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 183.034 kb on - strand, within GFF462 at 183.037 kb on + strand, within GFF462 at 183.100 kb on + strand, within GFF462 at 183.101 kb on - strand, within GFF462 at 183.101 kb on - strand, within GFF462 at 183.131 kb on + strand at 183.131 kb on + strand at 183.132 kb on - strand at 183.202 kb on - strand at 183.202 kb on - strand at 183.231 kb on + strand, within GFF463 at 183.516 kb on + strand, within GFF463 at 183.517 kb on - strand, within GFF463 at 183.687 kb on + strand at 183.687 kb on + strand at 183.687 kb on + strand at 183.688 kb on - strand at 183.689 kb on + strand at 183.689 kb on + strand at 183.690 kb on - strand at 183.690 kb on - strand at 183.690 kb on - strand at 183.726 kb on + strand at 183.727 kb on - strand at 183.727 kb on - strand at 183.799 kb on + strand at 183.800 kb on - strand at 183.803 kb on + strand at 183.806 kb on + strand at 183.845 kb on - strand at 183.847 kb on + strand at 183.890 kb on + strand at 183.961 kb on - strand, within GFF464 at 183.967 kb on + strand, within GFF464 at 183.967 kb on + strand, within GFF464 at 183.985 kb on + strand, within GFF464 at 183.986 kb on - strand, within GFF464 at 184.025 kb on - strand, within GFF464 at 184.114 kb on - strand, within GFF464 at 184.220 kb on - strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.244 kb on - strand, within GFF464 at 184.252 kb on + strand, within GFF464 at 184.274 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.373 kb on - strand, within GFF464 at 184.375 kb on - strand, within GFF464 at 184.469 kb on + strand, within GFF464 at 184.484 kb on + strand, within GFF464 at 184.485 kb on - strand, within GFF464 at 184.485 kb on - strand, within GFF464 at 184.586 kb on - strand at 185.082 kb on + strand at 185.473 kb on + strand, within GFF465 at 185.500 kb on + strand, within GFF465 at 185.512 kb on + strand, within GFF465 at 185.543 kb on + strand, within GFF465 at 185.544 kb on - strand, within GFF465 at 185.555 kb on + strand, within GFF465 at 185.556 kb on - strand, within GFF465 at 185.572 kb on + strand, within GFF465 at 185.577 kb on + strand at 185.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 183,034 - GFF462 0.70 +0.1 183,037 + GFF462 0.70 -1.1 183,100 + GFF462 0.85 -0.4 183,101 - GFF462 0.85 -0.1 183,101 - GFF462 0.85 +0.7 183,131 + +0.2 183,131 + +0.4 183,132 - -0.2 183,202 - +0.3 183,202 - +0.1 183,231 + GFF463 0.15 +0.5 183,516 + GFF463 0.64 +0.0 183,517 - GFF463 0.64 +0.4 183,687 + +0.3 183,687 + -0.5 183,687 + +0.0 183,688 - +0.2 183,689 + -0.2 183,689 + +0.1 183,690 - -0.4 183,690 - -0.4 183,690 - +0.2 183,726 + +0.2 183,727 - -0.1 183,727 - +0.9 183,799 + -0.7 183,800 - +0.6 183,803 + +0.6 183,806 + -0.2 183,845 - +1.1 183,847 + +0.4 183,890 + -0.1 183,961 - GFF464 0.11 +0.2 183,967 + GFF464 0.12 +0.1 183,967 + GFF464 0.12 +0.3 183,985 + GFF464 0.14 +1.0 183,986 - GFF464 0.15 +0.3 184,025 - GFF464 0.20 +0.2 184,114 - GFF464 0.33 -0.1 184,220 - GFF464 0.48 -0.1 184,243 + GFF464 0.51 -0.3 184,243 + GFF464 0.51 +0.2 184,243 + GFF464 0.51 -0.1 184,243 + GFF464 0.51 +1.2 184,244 - GFF464 0.51 +0.9 184,252 + GFF464 0.52 +0.4 184,274 + GFF464 0.55 -0.2 184,372 + GFF464 0.69 +0.7 184,372 + GFF464 0.69 -0.2 184,372 + GFF464 0.69 -0.1 184,373 - GFF464 0.70 +0.0 184,375 - GFF464 0.70 -0.2 184,469 + GFF464 0.83 -0.2 184,484 + GFF464 0.85 +0.1 184,485 - GFF464 0.85 +0.2 184,485 - GFF464 0.85 +0.2 184,586 - -0.0 185,082 + -1.0 185,473 + GFF465 0.70 +0.2 185,500 + GFF465 0.75 +0.0 185,512 + GFF465 0.78 +0.2 185,543 + GFF465 0.83 +0.3 185,544 - GFF465 0.84 +0.1 185,555 + GFF465 0.86 -0.4 185,556 - GFF465 0.86 +0.3 185,572 + GFF465 0.89 +0.5 185,577 + -0.1 185,577 + -0.7
Or see this region's nucleotide sequence