Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4637 and GFF4638 are separated by 13 nucleotides GFF4638 and GFF4639 are separated by 523 nucleotides
GFF4637 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 429,266 to 431,032
GFF4637
GFF4638 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 431,046 to 431,765
GFF4638
GFF4639 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 432,289 to 435,090
GFF4639
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.253 kb on - strand, within GFF4637 at 430.329 kb on - strand, within GFF4637 at 430.664 kb on - strand, within GFF4637 at 430.664 kb on - strand, within GFF4637 at 430.672 kb on + strand, within GFF4637 at 430.683 kb on + strand, within GFF4637 at 430.783 kb on + strand, within GFF4637 at 430.783 kb on + strand, within GFF4637 at 430.784 kb on - strand, within GFF4637 at 430.786 kb on + strand, within GFF4637 at 430.933 kb on + strand at 431.030 kb on + strand at 431.106 kb on - strand at 431.274 kb on - strand, within GFF4638 at 431.277 kb on - strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.735 kb on + strand at 431.736 kb on - strand at 431.736 kb on - strand at 431.763 kb on + strand at 431.767 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.900 kb on - strand at 431.903 kb on - strand at 431.957 kb on + strand at 431.957 kb on + strand at 431.957 kb on + strand at 431.958 kb on - strand at 431.961 kb on + strand at 431.961 kb on + strand at 432.098 kb on - strand at 432.114 kb on + strand at 432.248 kb on + strand at 432.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 430,253 - GFF4637 0.56 -1.9 430,329 - GFF4637 0.60 -2.1 430,664 - GFF4637 0.79 -2.1 430,664 - GFF4637 0.79 -1.3 430,672 + GFF4637 0.80 -2.4 430,683 + GFF4637 0.80 -1.3 430,783 + GFF4637 0.86 -1.2 430,783 + GFF4637 0.86 -1.7 430,784 - GFF4637 0.86 -1.1 430,786 + GFF4637 0.86 +0.0 430,933 + -2.7 431,030 + -1.3 431,106 - -1.0 431,274 - GFF4638 0.32 -0.6 431,277 - GFF4638 0.32 -3.6 431,495 + GFF4638 0.62 -1.1 431,495 + GFF4638 0.62 -1.1 431,495 + GFF4638 0.62 -1.7 431,735 + -1.5 431,736 - -1.6 431,736 - -1.4 431,763 + -0.5 431,767 + -0.9 431,795 + -0.9 431,795 + -0.8 431,900 - -2.0 431,903 - -2.3 431,957 + -1.1 431,957 + -1.1 431,957 + -0.5 431,958 - -1.8 431,961 + -0.7 431,961 + -0.4 432,098 - -1.8 432,114 + -2.4 432,248 + -1.2 432,249 - -3.3
Or see this region's nucleotide sequence