Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4635 and GFF4636 overlap by 7 nucleotides GFF4636 and GFF4637 overlap by 1 nucleotides GFF4637 and GFF4638 are separated by 13 nucleotides
GFF4635 - Succinate dehydrogenase cytochrome b-556 subunit, at 428,638 to 428,925
GFF4635
GFF4636 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 428,919 to 429,266
GFF4636
GFF4637 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 429,266 to 431,032
GFF4637
GFF4638 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 431,046 to 431,765
GFF4638
Position (kb) 429
430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 428.325 kb on - strand at 428.354 kb on + strand at 428.389 kb on - strand at 428.663 kb on + strand at 428.666 kb on + strand at 428.666 kb on + strand at 428.667 kb on - strand, within GFF4635 at 428.782 kb on + strand, within GFF4635 at 428.828 kb on - strand, within GFF4635 at 428.956 kb on + strand, within GFF4636 at 428.956 kb on + strand, within GFF4636 at 429.003 kb on + strand, within GFF4636 at 429.003 kb on + strand, within GFF4636 at 429.012 kb on + strand, within GFF4636 at 429.229 kb on - strand, within GFF4636 at 429.229 kb on - strand, within GFF4636 at 429.237 kb on + strand at 429.237 kb on + strand at 429.473 kb on + strand, within GFF4637 at 429.474 kb on - strand, within GFF4637 at 429.474 kb on - strand, within GFF4637 at 429.524 kb on + strand, within GFF4637 at 429.524 kb on + strand, within GFF4637 at 429.525 kb on - strand, within GFF4637 at 429.526 kb on + strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.604 kb on + strand, within GFF4637 at 429.604 kb on + strand, within GFF4637 at 429.608 kb on + strand, within GFF4637 at 429.702 kb on + strand, within GFF4637 at 429.714 kb on - strand, within GFF4637 at 429.714 kb on - strand, within GFF4637 at 429.758 kb on + strand, within GFF4637 at 429.890 kb on + strand, within GFF4637 at 430.253 kb on - strand, within GFF4637 at 430.329 kb on - strand, within GFF4637 at 430.664 kb on - strand, within GFF4637 at 430.664 kb on - strand, within GFF4637 at 430.672 kb on + strand, within GFF4637 at 430.683 kb on + strand, within GFF4637 at 430.783 kb on + strand, within GFF4637 at 430.783 kb on + strand, within GFF4637 at 430.784 kb on - strand, within GFF4637 at 430.786 kb on + strand, within GFF4637 at 430.933 kb on + strand at 431.030 kb on + strand at 431.106 kb on - strand at 431.274 kb on - strand, within GFF4638 at 431.277 kb on - strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.495 kb on + strand, within GFF4638 at 431.735 kb on + strand at 431.736 kb on - strand at 431.736 kb on - strand at 431.763 kb on + strand at 431.767 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.900 kb on - strand at 431.903 kb on - strand at 431.957 kb on + strand at 431.957 kb on + strand at 431.957 kb on + strand at 431.958 kb on - strand at 431.961 kb on + strand at 431.961 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 428,325 - -1.8 428,354 + -0.2 428,389 - -1.6 428,663 + -3.1 428,666 + -0.9 428,666 + -2.1 428,667 - GFF4635 0.10 -3.0 428,782 + GFF4635 0.50 -1.4 428,828 - GFF4635 0.66 -3.5 428,956 + GFF4636 0.11 -1.8 428,956 + GFF4636 0.11 -2.3 429,003 + GFF4636 0.24 -1.3 429,003 + GFF4636 0.24 -1.8 429,012 + GFF4636 0.27 -2.1 429,229 - GFF4636 0.89 +0.1 429,229 - GFF4636 0.89 -2.5 429,237 + -0.8 429,237 + -1.8 429,473 + GFF4637 0.12 -1.0 429,474 - GFF4637 0.12 -0.8 429,474 - GFF4637 0.12 -2.3 429,524 + GFF4637 0.15 -1.1 429,524 + GFF4637 0.15 -1.7 429,525 - GFF4637 0.15 -1.6 429,526 + GFF4637 0.15 -2.5 429,527 - GFF4637 0.15 -1.5 429,527 - GFF4637 0.15 -1.7 429,527 - GFF4637 0.15 -2.3 429,604 + GFF4637 0.19 -1.5 429,604 + GFF4637 0.19 -2.0 429,608 + GFF4637 0.19 -3.0 429,702 + GFF4637 0.25 -2.5 429,714 - GFF4637 0.25 -2.9 429,714 - GFF4637 0.25 -0.9 429,758 + GFF4637 0.28 -1.6 429,890 + GFF4637 0.35 -2.0 430,253 - GFF4637 0.56 -1.9 430,329 - GFF4637 0.60 -2.1 430,664 - GFF4637 0.79 -2.1 430,664 - GFF4637 0.79 -1.3 430,672 + GFF4637 0.80 -2.4 430,683 + GFF4637 0.80 -1.3 430,783 + GFF4637 0.86 -1.2 430,783 + GFF4637 0.86 -1.7 430,784 - GFF4637 0.86 -1.1 430,786 + GFF4637 0.86 +0.0 430,933 + -2.7 431,030 + -1.3 431,106 - -1.0 431,274 - GFF4638 0.32 -0.6 431,277 - GFF4638 0.32 -3.6 431,495 + GFF4638 0.62 -1.1 431,495 + GFF4638 0.62 -1.1 431,495 + GFF4638 0.62 -1.7 431,735 + -1.5 431,736 - -1.6 431,736 - -1.4 431,763 + -0.5 431,767 + -0.9 431,795 + -0.9 431,795 + -0.8 431,900 - -2.0 431,903 - -2.3 431,957 + -1.1 431,957 + -1.1 431,957 + -0.5 431,958 - -1.8 431,961 + -0.7 431,961 + -0.4
Or see this region's nucleotide sequence