Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4624

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4623 and GFF4624 overlap by 1 nucleotidesGFF4624 and GFF4625 are separated by 12 nucleotides GFF4623 - UDP-galactopyranose mutase (EC 5.4.99.9), at 414,561 to 415,712 GFF4623 GFF4624 - Putative glycosyl transferase, at 415,712 to 416,605 GFF4624 GFF4625 - Putative glycosyl transferase, at 416,618 to 417,751 GFF4625 Position (kb) 415 416 417Strain fitness (log2 ratio) -1 0 1at 415.003 kb on - strand, within GFF4623at 415.003 kb on - strand, within GFF4623at 415.025 kb on + strand, within GFF4623at 416.072 kb on + strand, within GFF4624at 416.887 kb on + strand, within GFF4625

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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415,003 - GFF4623 0.38 +0.2
415,003 - GFF4623 0.38 -0.2
415,025 + GFF4623 0.40 -0.2
416,072 + GFF4624 0.40 +0.1
416,887 + GFF4625 0.24 -0.1

Or see this region's nucleotide sequence