Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4603 and GFF4604 overlap by 4 nucleotides GFF4604 and GFF4605 are separated by 397 nucleotides GFF4605 and GFF4606 are separated by 250 nucleotides
GFF4603 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 392,607 to 393,926
GFF4603
GFF4604 - Ornithine decarboxylase (EC 4.1.1.17), at 393,923 to 396,121
GFF4604
GFF4605 - hypothetical protein, at 396,519 to 396,632
GFF4605
GFF4606 - sensor histidine kinase, at 396,883 to 397,560
GFF4606
Position (kb) 393
394
395
396
397 Strain fitness (log2 ratio) -1
0
1 at 393.215 kb on - strand, within GFF4603 at 393.215 kb on - strand, within GFF4603 at 393.327 kb on + strand, within GFF4603 at 393.393 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.476 kb on + strand, within GFF4603 at 393.477 kb on - strand, within GFF4603 at 393.494 kb on + strand, within GFF4603 at 393.497 kb on - strand, within GFF4603 at 393.589 kb on + strand, within GFF4603 at 393.656 kb on + strand, within GFF4603 at 393.658 kb on + strand, within GFF4603 at 393.659 kb on - strand, within GFF4603 at 393.738 kb on - strand, within GFF4603 at 393.800 kb on + strand at 393.872 kb on + strand at 393.873 kb on - strand at 393.920 kb on + strand at 394.018 kb on - strand at 394.122 kb on - strand at 394.122 kb on - strand at 394.219 kb on - strand, within GFF4604 at 394.219 kb on - strand, within GFF4604 at 394.224 kb on + strand, within GFF4604 at 394.224 kb on + strand, within GFF4604 at 394.225 kb on - strand, within GFF4604 at 394.225 kb on - strand, within GFF4604 at 394.225 kb on - strand, within GFF4604 at 394.246 kb on + strand, within GFF4604 at 394.315 kb on - strand, within GFF4604 at 394.351 kb on + strand, within GFF4604 at 394.394 kb on + strand, within GFF4604 at 394.466 kb on + strand, within GFF4604 at 394.865 kb on - strand, within GFF4604 at 395.012 kb on - strand, within GFF4604 at 395.083 kb on + strand, within GFF4604 at 395.184 kb on + strand, within GFF4604 at 395.230 kb on - strand, within GFF4604 at 395.245 kb on - strand, within GFF4604 at 395.377 kb on - strand, within GFF4604 at 395.646 kb on - strand, within GFF4604 at 395.769 kb on + strand, within GFF4604 at 395.770 kb on - strand, within GFF4604 at 395.848 kb on - strand, within GFF4604 at 396.456 kb on - strand at 396.554 kb on + strand, within GFF4605 at 396.922 kb on - strand at 396.977 kb on + strand, within GFF4606 at 396.977 kb on + strand, within GFF4606 at 396.978 kb on - strand, within GFF4606 at 397.030 kb on + strand, within GFF4606 at 397.065 kb on + strand, within GFF4606 at 397.065 kb on + strand, within GFF4606
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 393,215 - GFF4603 0.46 +0.8 393,215 - GFF4603 0.46 +0.2 393,327 + GFF4603 0.55 +0.3 393,393 + GFF4603 0.60 +0.7 393,397 + GFF4603 0.60 -1.4 393,397 + GFF4603 0.60 +0.1 393,397 + GFF4603 0.60 +0.4 393,398 - GFF4603 0.60 -0.0 393,398 - GFF4603 0.60 +0.2 393,398 - GFF4603 0.60 +0.4 393,476 + GFF4603 0.66 +0.4 393,477 - GFF4603 0.66 +0.4 393,494 + GFF4603 0.67 -0.5 393,497 - GFF4603 0.67 +0.2 393,589 + GFF4603 0.74 +0.2 393,656 + GFF4603 0.79 -0.0 393,658 + GFF4603 0.80 -0.1 393,659 - GFF4603 0.80 -1.0 393,738 - GFF4603 0.86 +0.5 393,800 + +0.5 393,872 + +0.3 393,873 - +0.2 393,920 + +0.4 394,018 - +0.3 394,122 - -0.7 394,122 - -1.4 394,219 - GFF4604 0.13 +0.2 394,219 - GFF4604 0.13 -1.0 394,224 + GFF4604 0.14 +0.3 394,224 + GFF4604 0.14 +0.6 394,225 - GFF4604 0.14 +0.1 394,225 - GFF4604 0.14 +0.4 394,225 - GFF4604 0.14 +0.7 394,246 + GFF4604 0.15 +0.3 394,315 - GFF4604 0.18 -0.2 394,351 + GFF4604 0.19 -0.3 394,394 + GFF4604 0.21 +0.8 394,466 + GFF4604 0.25 +0.4 394,865 - GFF4604 0.43 +0.1 395,012 - GFF4604 0.50 +0.4 395,083 + GFF4604 0.53 +0.9 395,184 + GFF4604 0.57 +0.5 395,230 - GFF4604 0.59 +0.3 395,245 - GFF4604 0.60 +0.9 395,377 - GFF4604 0.66 +0.2 395,646 - GFF4604 0.78 -0.3 395,769 + GFF4604 0.84 +0.9 395,770 - GFF4604 0.84 +0.5 395,848 - GFF4604 0.88 +0.6 396,456 - +0.9 396,554 + GFF4605 0.31 +0.2 396,922 - +0.1 396,977 + GFF4606 0.14 +1.6 396,977 + GFF4606 0.14 -0.7 396,978 - GFF4606 0.14 -0.0 397,030 + GFF4606 0.22 +0.2 397,065 + GFF4606 0.27 -0.3 397,065 + GFF4606 0.27 -0.3
Or see this region's nucleotide sequence