Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4583 and GFF4584 are separated by 46 nucleotides GFF4584 and GFF4585 are separated by 4 nucleotides
GFF4583 - Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem, at 371,437 to 372,189
GFF4583
GFF4584 - N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family, at 372,236 to 373,456
GFF4584
GFF4585 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25), at 373,461 to 374,615
GFF4585
Position (kb) 372
373
374 Strain fitness (log2 ratio) -1
0
1 at 371.379 kb on + strand at 371.380 kb on - strand at 371.412 kb on - strand at 371.450 kb on - strand at 371.469 kb on - strand at 371.503 kb on - strand at 371.598 kb on + strand, within GFF4583 at 371.672 kb on + strand, within GFF4583 at 371.673 kb on - strand, within GFF4583 at 371.805 kb on + strand, within GFF4583 at 371.890 kb on - strand, within GFF4583 at 371.891 kb on + strand, within GFF4583 at 371.983 kb on - strand, within GFF4583 at 371.985 kb on - strand, within GFF4583 at 372.060 kb on - strand, within GFF4583 at 372.173 kb on - strand at 372.195 kb on - strand at 372.213 kb on + strand at 372.224 kb on + strand at 372.224 kb on + strand at 372.227 kb on - strand at 372.227 kb on - strand at 372.287 kb on - strand at 372.336 kb on - strand at 372.553 kb on + strand, within GFF4584 at 372.611 kb on - strand, within GFF4584 at 372.844 kb on - strand, within GFF4584 at 373.042 kb on + strand, within GFF4584 at 373.043 kb on - strand, within GFF4584 at 373.135 kb on + strand, within GFF4584 at 373.135 kb on + strand, within GFF4584 at 373.150 kb on - strand, within GFF4584 at 373.158 kb on - strand, within GFF4584 at 373.229 kb on - strand, within GFF4584 at 373.427 kb on - strand at 373.457 kb on - strand at 373.466 kb on + strand at 373.704 kb on - strand, within GFF4585 at 373.892 kb on - strand, within GFF4585 at 373.892 kb on - strand, within GFF4585 at 373.948 kb on + strand, within GFF4585 at 374.319 kb on - strand, within GFF4585 at 374.337 kb on - strand, within GFF4585 at 374.339 kb on + strand, within GFF4585 at 374.340 kb on - strand, within GFF4585 at 374.340 kb on - strand, within GFF4585 at 374.340 kb on - strand, within GFF4585 at 374.406 kb on - strand, within GFF4585
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 371,379 + -0.1 371,380 - +0.2 371,412 - -0.4 371,450 - +0.0 371,469 - -0.7 371,503 - -1.7 371,598 + GFF4583 0.21 +0.1 371,672 + GFF4583 0.31 -0.0 371,673 - GFF4583 0.31 +0.1 371,805 + GFF4583 0.49 +0.1 371,890 - GFF4583 0.60 -0.0 371,891 + GFF4583 0.60 -0.6 371,983 - GFF4583 0.73 -0.0 371,985 - GFF4583 0.73 -0.1 372,060 - GFF4583 0.83 -0.0 372,173 - -1.1 372,195 - -0.3 372,213 + +0.9 372,224 + -0.6 372,224 + -1.0 372,227 - +0.7 372,227 - +0.2 372,287 - -0.9 372,336 - -0.8 372,553 + GFF4584 0.26 -1.7 372,611 - GFF4584 0.31 -1.3 372,844 - GFF4584 0.50 +0.5 373,042 + GFF4584 0.66 -0.7 373,043 - GFF4584 0.66 -0.9 373,135 + GFF4584 0.74 -1.5 373,135 + GFF4584 0.74 -0.5 373,150 - GFF4584 0.75 -0.9 373,158 - GFF4584 0.76 -1.6 373,229 - GFF4584 0.81 -0.8 373,427 - -1.1 373,457 - -1.2 373,466 + -0.5 373,704 - GFF4585 0.21 -0.4 373,892 - GFF4585 0.37 -1.0 373,892 - GFF4585 0.37 +0.7 373,948 + GFF4585 0.42 -1.4 374,319 - GFF4585 0.74 -0.6 374,337 - GFF4585 0.76 -0.7 374,339 + GFF4585 0.76 -1.4 374,340 - GFF4585 0.76 -0.5 374,340 - GFF4585 0.76 -1.3 374,340 - GFF4585 0.76 -0.5 374,406 - GFF4585 0.82 -0.7
Or see this region's nucleotide sequence