Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4575 and GFF4576 are separated by 157 nucleotides GFF4576 and GFF4577 overlap by 4 nucleotides GFF4577 and GFF4578 are separated by 58 nucleotides GFF4578 and GFF4579 are separated by 26 nucleotides
GFF4575 - Magnesium and cobalt efflux protein CorC, at 361,944 to 362,822
GFF4575
GFF4576 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 362,980 to 363,453
GFF4576
GFF4577 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 363,450 to 364,496
GFF4577
GFF4578 - hypothetical protein, at 364,555 to 364,674
GFF4578
GFF4579 - tRNA-i(6)A37 methylthiotransferase, at 364,701 to 366,125
GFF4579
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 362.607 kb on - strand, within GFF4575 at 362.607 kb on - strand, within GFF4575 at 362.853 kb on - strand at 362.871 kb on - strand at 362.871 kb on - strand at 362.873 kb on - strand at 362.924 kb on - strand at 363.006 kb on - strand at 363.796 kb on - strand, within GFF4577 at 363.796 kb on - strand, within GFF4577 at 363.991 kb on - strand, within GFF4577 at 364.298 kb on - strand, within GFF4577 at 364.489 kb on - strand at 364.845 kb on - strand, within GFF4579 at 364.865 kb on + strand, within GFF4579 at 364.865 kb on + strand, within GFF4579 at 364.988 kb on + strand, within GFF4579 at 365.021 kb on + strand, within GFF4579 at 365.117 kb on + strand, within GFF4579 at 365.117 kb on + strand, within GFF4579 at 365.118 kb on - strand, within GFF4579 at 365.153 kb on + strand, within GFF4579 at 365.270 kb on - strand, within GFF4579 at 365.372 kb on - strand, within GFF4579 at 365.374 kb on - strand, within GFF4579 at 365.381 kb on + strand, within GFF4579 at 365.384 kb on + strand, within GFF4579 at 365.478 kb on - strand, within GFF4579
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 362,607 - GFF4575 0.75 -2.3 362,607 - GFF4575 0.75 -1.0 362,853 - -0.1 362,871 - -0.6 362,871 - +0.3 362,873 - -0.2 362,924 - -0.2 363,006 - -0.6 363,796 - GFF4577 0.33 -0.9 363,796 - GFF4577 0.33 -0.5 363,991 - GFF4577 0.52 +0.1 364,298 - GFF4577 0.81 +0.6 364,489 - -2.3 364,845 - GFF4579 0.10 -0.4 364,865 + GFF4579 0.12 -0.4 364,865 + GFF4579 0.12 -0.8 364,988 + GFF4579 0.20 -0.8 365,021 + GFF4579 0.22 +0.4 365,117 + GFF4579 0.29 -1.3 365,117 + GFF4579 0.29 +0.1 365,118 - GFF4579 0.29 -0.8 365,153 + GFF4579 0.32 -2.9 365,270 - GFF4579 0.40 -0.4 365,372 - GFF4579 0.47 -0.5 365,374 - GFF4579 0.47 +0.1 365,381 + GFF4579 0.48 -1.8 365,384 + GFF4579 0.48 -0.4 365,478 - GFF4579 0.55 -0.9
Or see this region's nucleotide sequence