Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4564 and GFF4565 are separated by 11 nucleotides GFF4565 and GFF4566 overlap by 4 nucleotides
GFF4564 - Putative molecular chaperone, DnaJ family, at 349,116 to 350,549
GFF4564
GFF4565 - FIG00637867: hypothetical protein, at 350,561 to 351,256
GFF4565
GFF4566 - FIG00638911: hypothetical protein, at 351,253 to 352,725
GFF4566
Position (kb) 350
351
352 Strain fitness (log2 ratio) -1
0
1
2 at 349.763 kb on - strand, within GFF4564 at 349.881 kb on + strand, within GFF4564 at 349.881 kb on + strand, within GFF4564 at 349.882 kb on - strand, within GFF4564 at 349.882 kb on - strand, within GFF4564 at 349.884 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.086 kb on - strand, within GFF4564 at 350.232 kb on + strand, within GFF4564 at 350.245 kb on - strand, within GFF4564 at 350.258 kb on + strand, within GFF4564 at 350.527 kb on + strand at 350.528 kb on - strand at 350.531 kb on - strand at 350.616 kb on + strand at 350.616 kb on + strand at 350.617 kb on - strand at 350.617 kb on - strand at 350.620 kb on + strand at 350.620 kb on + strand at 350.642 kb on - strand, within GFF4565 at 350.657 kb on + strand, within GFF4565 at 350.658 kb on - strand, within GFF4565 at 350.658 kb on - strand, within GFF4565 at 350.660 kb on - strand, within GFF4565 at 350.732 kb on + strand, within GFF4565 at 350.733 kb on - strand, within GFF4565 at 350.791 kb on + strand, within GFF4565 at 350.797 kb on - strand, within GFF4565 at 350.915 kb on + strand, within GFF4565 at 351.002 kb on + strand, within GFF4565 at 351.018 kb on - strand, within GFF4565 at 351.041 kb on + strand, within GFF4565 at 351.097 kb on - strand, within GFF4565 at 351.190 kb on - strand at 351.190 kb on - strand at 351.235 kb on + strand at 351.258 kb on + strand at 351.306 kb on + strand at 351.465 kb on - strand, within GFF4566 at 351.574 kb on - strand, within GFF4566 at 351.891 kb on + strand, within GFF4566 at 351.906 kb on + strand, within GFF4566 at 352.009 kb on + strand, within GFF4566 at 352.010 kb on - strand, within GFF4566 at 352.010 kb on - strand, within GFF4566 at 352.010 kb on - strand, within GFF4566 at 352.012 kb on + strand, within GFF4566 at 352.202 kb on - strand, within GFF4566 at 352.202 kb on - strand, within GFF4566
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 349,763 - GFF4564 0.45 -0.7 349,881 + GFF4564 0.53 -0.3 349,881 + GFF4564 0.53 -0.9 349,882 - GFF4564 0.53 -0.1 349,882 - GFF4564 0.53 +0.3 349,884 + GFF4564 0.54 +0.8 350,085 + GFF4564 0.68 +0.2 350,085 + GFF4564 0.68 -0.8 350,085 + GFF4564 0.68 -0.4 350,086 - GFF4564 0.68 +0.5 350,232 + GFF4564 0.78 +0.5 350,245 - GFF4564 0.79 -0.5 350,258 + GFF4564 0.80 -0.9 350,527 + -0.1 350,528 - -1.5 350,531 - -0.3 350,616 + -0.2 350,616 + -0.3 350,617 - -0.1 350,617 - +0.2 350,620 + +0.2 350,620 + +0.3 350,642 - GFF4565 0.12 -0.5 350,657 + GFF4565 0.14 -0.0 350,658 - GFF4565 0.14 -0.4 350,658 - GFF4565 0.14 -0.3 350,660 - GFF4565 0.14 -0.0 350,732 + GFF4565 0.25 -0.0 350,733 - GFF4565 0.25 +0.0 350,791 + GFF4565 0.33 -0.0 350,797 - GFF4565 0.34 -0.1 350,915 + GFF4565 0.51 -0.9 351,002 + GFF4565 0.63 -0.6 351,018 - GFF4565 0.66 +0.4 351,041 + GFF4565 0.69 -0.6 351,097 - GFF4565 0.77 -1.3 351,190 - +0.5 351,190 - -0.2 351,235 + -0.1 351,258 + -0.1 351,306 + +0.3 351,465 - GFF4566 0.14 -0.5 351,574 - GFF4566 0.22 -0.9 351,891 + GFF4566 0.43 +0.1 351,906 + GFF4566 0.44 -0.4 352,009 + GFF4566 0.51 -0.9 352,010 - GFF4566 0.51 +0.3 352,010 - GFF4566 0.51 +0.8 352,010 - GFF4566 0.51 -0.6 352,012 + GFF4566 0.52 +1.8 352,202 - GFF4566 0.64 +0.1 352,202 - GFF4566 0.64 +0.9
Or see this region's nucleotide sequence