Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4523 and GFF4524 are separated by 109 nucleotides GFF4524 and GFF4525 are separated by 37 nucleotides GFF4525 and GFF4526 overlap by 26 nucleotides
GFF4523 - Ribonuclease I precursor (EC 3.1.27.6), at 310,203 to 311,009
GFF4523
GFF4524 - Citrate Succinate antiporter (TC 2.A.47.3.2), at 311,119 to 312,582
GFF4524
GFF4525 - '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme- A synthase (EC 2.7.8.25)' transl_table=11, at 312,620 to 313,513
GFF4525
GFF4526 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61), at 313,488 to 314,039
GFF4526
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1 at 310.510 kb on + strand, within GFF4523 at 310.900 kb on + strand, within GFF4523 at 311.026 kb on + strand at 311.053 kb on - strand at 311.170 kb on - strand at 311.172 kb on - strand at 311.172 kb on - strand at 311.172 kb on - strand at 311.205 kb on - strand at 311.284 kb on - strand, within GFF4524 at 311.308 kb on - strand, within GFF4524 at 311.405 kb on + strand, within GFF4524 at 311.406 kb on - strand, within GFF4524 at 311.476 kb on - strand, within GFF4524 at 311.544 kb on + strand, within GFF4524 at 311.812 kb on + strand, within GFF4524 at 311.817 kb on - strand, within GFF4524 at 311.930 kb on - strand, within GFF4524 at 311.932 kb on + strand, within GFF4524 at 311.932 kb on + strand, within GFF4524 at 312.473 kb on + strand at 312.495 kb on + strand at 312.495 kb on + strand at 312.770 kb on + strand, within GFF4525 at 312.773 kb on + strand, within GFF4525 at 312.871 kb on + strand, within GFF4525 at 313.002 kb on + strand, within GFF4525 at 313.028 kb on + strand, within GFF4525 at 313.029 kb on - strand, within GFF4525 at 313.029 kb on - strand, within GFF4525 at 313.118 kb on + strand, within GFF4525 at 313.118 kb on + strand, within GFF4525 at 313.118 kb on + strand, within GFF4525 at 313.119 kb on - strand, within GFF4525
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 310,510 + GFF4523 0.38 -0.5 310,900 + GFF4523 0.86 +0.2 311,026 + +0.5 311,053 - +0.1 311,170 - -1.1 311,172 - -0.4 311,172 - +0.1 311,172 - -0.0 311,205 - +0.7 311,284 - GFF4524 0.11 +0.1 311,308 - GFF4524 0.13 +0.3 311,405 + GFF4524 0.20 +1.2 311,406 - GFF4524 0.20 -0.2 311,476 - GFF4524 0.24 -0.9 311,544 + GFF4524 0.29 +0.5 311,812 + GFF4524 0.47 -1.2 311,817 - GFF4524 0.48 -0.3 311,930 - GFF4524 0.55 -0.2 311,932 + GFF4524 0.56 -1.3 311,932 + GFF4524 0.56 -0.2 312,473 + +1.0 312,495 + +0.2 312,495 + -0.2 312,770 + GFF4525 0.17 +0.8 312,773 + GFF4525 0.17 +0.5 312,871 + GFF4525 0.28 -0.6 313,002 + GFF4525 0.43 -0.3 313,028 + GFF4525 0.46 -0.8 313,029 - GFF4525 0.46 -1.1 313,029 - GFF4525 0.46 -0.7 313,118 + GFF4525 0.56 -0.5 313,118 + GFF4525 0.56 +0.0 313,118 + GFF4525 0.56 -0.1 313,119 - GFF4525 0.56 -1.2
Or see this region's nucleotide sequence