Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4500 and GFF4501 are separated by 9 nucleotides GFF4501 and GFF4502 are separated by 13 nucleotides GFF4502 and GFF4503 overlap by 1 nucleotides
GFF4500 - Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis, at 286,469 to 287,644
GFF4500
GFF4501 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore, at 287,654 to 289,264
GFF4501
GFF4502 - Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis, at 289,278 to 290,135
GFF4502
GFF4503 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis, at 290,135 to 290,890
GFF4503
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -1
0
1 at 286.685 kb on - strand, within GFF4500 at 286.929 kb on + strand, within GFF4500 at 286.929 kb on + strand, within GFF4500 at 286.933 kb on + strand, within GFF4500 at 287.254 kb on - strand, within GFF4500 at 287.642 kb on + strand at 287.661 kb on + strand at 287.661 kb on + strand at 287.715 kb on - strand at 287.847 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.946 kb on + strand, within GFF4501 at 287.947 kb on - strand, within GFF4501 at 287.990 kb on - strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.044 kb on - strand, within GFF4501 at 288.044 kb on - strand, within GFF4501 at 288.229 kb on + strand, within GFF4501 at 288.278 kb on + strand, within GFF4501 at 288.356 kb on - strand, within GFF4501 at 288.359 kb on + strand, within GFF4501 at 288.360 kb on - strand, within GFF4501 at 288.360 kb on - strand, within GFF4501 at 288.514 kb on - strand, within GFF4501 at 288.994 kb on - strand, within GFF4501 at 289.083 kb on - strand, within GFF4501 at 289.093 kb on - strand, within GFF4501 at 289.093 kb on - strand, within GFF4501 at 289.120 kb on - strand at 289.302 kb on + strand at 289.388 kb on + strand, within GFF4502 at 289.389 kb on - strand, within GFF4502 at 289.478 kb on + strand, within GFF4502 at 289.479 kb on - strand, within GFF4502 at 289.503 kb on + strand, within GFF4502 at 289.556 kb on + strand, within GFF4502 at 289.556 kb on + strand, within GFF4502 at 289.556 kb on + strand, within GFF4502 at 289.557 kb on - strand, within GFF4502 at 289.604 kb on - strand, within GFF4502 at 289.654 kb on - strand, within GFF4502 at 289.739 kb on + strand, within GFF4502 at 289.852 kb on - strand, within GFF4502 at 289.852 kb on - strand, within GFF4502 at 290.015 kb on - strand, within GFF4502 at 290.051 kb on - strand at 290.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 286,685 - GFF4500 0.18 +1.2 286,929 + GFF4500 0.39 +0.2 286,929 + GFF4500 0.39 +1.1 286,933 + GFF4500 0.39 +0.5 287,254 - GFF4500 0.67 +0.6 287,642 + +0.2 287,661 + -0.1 287,661 + -0.3 287,715 - -0.1 287,847 + GFF4501 0.12 +1.0 287,912 + GFF4501 0.16 -1.0 287,912 + GFF4501 0.16 +0.4 287,912 + GFF4501 0.16 -0.2 287,913 - GFF4501 0.16 +0.1 287,913 - GFF4501 0.16 -0.3 287,913 - GFF4501 0.16 -1.5 287,913 - GFF4501 0.16 +0.3 287,946 + GFF4501 0.18 +0.3 287,947 - GFF4501 0.18 +0.2 287,990 - GFF4501 0.21 +0.9 288,043 + GFF4501 0.24 -0.3 288,043 + GFF4501 0.24 -0.8 288,043 + GFF4501 0.24 +0.1 288,044 - GFF4501 0.24 +0.5 288,044 - GFF4501 0.24 +0.1 288,229 + GFF4501 0.36 -0.4 288,278 + GFF4501 0.39 -0.0 288,356 - GFF4501 0.44 -0.7 288,359 + GFF4501 0.44 -0.5 288,360 - GFF4501 0.44 +0.0 288,360 - GFF4501 0.44 +0.2 288,514 - GFF4501 0.53 +0.4 288,994 - GFF4501 0.83 +0.6 289,083 - GFF4501 0.89 +0.3 289,093 - GFF4501 0.89 -0.1 289,093 - GFF4501 0.89 +0.1 289,120 - -0.0 289,302 + -0.7 289,388 + GFF4502 0.13 -0.3 289,389 - GFF4502 0.13 -0.8 289,478 + GFF4502 0.23 -0.3 289,479 - GFF4502 0.23 -0.4 289,503 + GFF4502 0.26 -0.2 289,556 + GFF4502 0.32 -0.6 289,556 + GFF4502 0.32 -0.2 289,556 + GFF4502 0.32 +0.3 289,557 - GFF4502 0.33 -0.7 289,604 - GFF4502 0.38 -0.4 289,654 - GFF4502 0.44 -1.1 289,739 + GFF4502 0.54 +0.6 289,852 - GFF4502 0.67 -0.2 289,852 - GFF4502 0.67 +0.9 290,015 - GFF4502 0.86 -0.3 290,051 - -0.7 290,133 + -0.2
Or see this region's nucleotide sequence