Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4499 and GFF4500 are separated by 308 nucleotides GFF4500 and GFF4501 are separated by 9 nucleotides
GFF4499 - Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2), at 285,204 to 286,160
GFF4499
GFF4500 - Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis, at 286,469 to 287,644
GFF4500
GFF4501 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore, at 287,654 to 289,264
GFF4501
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1 at 286.164 kb on - strand at 286.231 kb on - strand at 286.241 kb on - strand at 286.280 kb on - strand at 286.314 kb on + strand at 286.376 kb on - strand at 286.379 kb on + strand at 286.380 kb on - strand at 286.380 kb on - strand at 286.380 kb on - strand at 286.380 kb on - strand at 286.441 kb on - strand at 286.441 kb on - strand at 286.442 kb on + strand at 286.442 kb on + strand at 286.443 kb on - strand at 286.444 kb on + strand at 286.444 kb on + strand at 286.444 kb on + strand at 286.445 kb on - strand at 286.445 kb on - strand at 286.452 kb on + strand at 286.453 kb on - strand at 286.474 kb on + strand at 286.475 kb on - strand at 286.685 kb on - strand, within GFF4500 at 286.929 kb on + strand, within GFF4500 at 286.929 kb on + strand, within GFF4500 at 286.933 kb on + strand, within GFF4500 at 287.254 kb on - strand, within GFF4500 at 287.642 kb on + strand at 287.661 kb on + strand at 287.661 kb on + strand at 287.715 kb on - strand at 287.847 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.912 kb on + strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.913 kb on - strand, within GFF4501 at 287.946 kb on + strand, within GFF4501 at 287.947 kb on - strand, within GFF4501 at 287.990 kb on - strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.043 kb on + strand, within GFF4501 at 288.044 kb on - strand, within GFF4501 at 288.044 kb on - strand, within GFF4501 at 288.229 kb on + strand, within GFF4501 at 288.278 kb on + strand, within GFF4501 at 288.356 kb on - strand, within GFF4501 at 288.359 kb on + strand, within GFF4501 at 288.360 kb on - strand, within GFF4501 at 288.360 kb on - strand, within GFF4501 at 288.514 kb on - strand, within GFF4501
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 286,164 - +0.2 286,231 - +0.3 286,241 - -0.3 286,280 - +1.2 286,314 + +0.5 286,376 - +0.2 286,379 + +0.3 286,380 - -0.1 286,380 - -0.6 286,380 - +0.2 286,380 - +0.3 286,441 - -0.3 286,441 - -0.3 286,442 + -0.3 286,442 + -0.0 286,443 - +0.2 286,444 + -0.3 286,444 + +0.4 286,444 + +0.6 286,445 - -1.5 286,445 - -0.4 286,452 + +0.1 286,453 - -0.0 286,474 + +0.2 286,475 - -0.9 286,685 - GFF4500 0.18 +1.2 286,929 + GFF4500 0.39 +0.2 286,929 + GFF4500 0.39 +1.1 286,933 + GFF4500 0.39 +0.5 287,254 - GFF4500 0.67 +0.6 287,642 + +0.2 287,661 + -0.1 287,661 + -0.3 287,715 - -0.1 287,847 + GFF4501 0.12 +1.0 287,912 + GFF4501 0.16 -1.0 287,912 + GFF4501 0.16 +0.4 287,912 + GFF4501 0.16 -0.2 287,913 - GFF4501 0.16 +0.1 287,913 - GFF4501 0.16 -0.3 287,913 - GFF4501 0.16 -1.5 287,913 - GFF4501 0.16 +0.3 287,946 + GFF4501 0.18 +0.3 287,947 - GFF4501 0.18 +0.2 287,990 - GFF4501 0.21 +0.9 288,043 + GFF4501 0.24 -0.3 288,043 + GFF4501 0.24 -0.8 288,043 + GFF4501 0.24 +0.1 288,044 - GFF4501 0.24 +0.5 288,044 - GFF4501 0.24 +0.1 288,229 + GFF4501 0.36 -0.4 288,278 + GFF4501 0.39 -0.0 288,356 - GFF4501 0.44 -0.7 288,359 + GFF4501 0.44 -0.5 288,360 - GFF4501 0.44 +0.0 288,360 - GFF4501 0.44 +0.2 288,514 - GFF4501 0.53 +0.4
Or see this region's nucleotide sequence