Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4377 and GFF4378 are separated by 27 nucleotides GFF4378 and GFF4379 are separated by 495 nucleotides GFF4379 and GFF4380 are separated by 22 nucleotides
GFF4377 - Haemolysin expression modulating protein, at 158,345 to 158,563
GFF4377
GFF4378 - FIG00948312: hypothetical protein, at 158,591 to 158,965
GFF4378
GFF4379 - RND efflux system, inner membrane transporter CmeB, at 159,461 to 162,610
GFF4379
GFF4380 - Membrane fusion protein of RND family multidrug efflux pump, at 162,633 to 163,826
GFF4380
Position (kb) 159
160
161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.698 kb on - strand, within GFF4378 at 158.785 kb on + strand, within GFF4378 at 158.803 kb on + strand, within GFF4378 at 158.934 kb on - strand at 158.936 kb on - strand at 158.936 kb on - strand at 159.018 kb on - strand at 159.023 kb on + strand at 159.023 kb on + strand at 159.755 kb on + strand at 159.779 kb on - strand, within GFF4379 at 159.782 kb on + strand, within GFF4379 at 159.783 kb on - strand, within GFF4379 at 159.834 kb on + strand, within GFF4379 at 159.835 kb on - strand, within GFF4379 at 159.835 kb on - strand, within GFF4379 at 159.922 kb on + strand, within GFF4379 at 159.936 kb on + strand, within GFF4379 at 159.937 kb on - strand, within GFF4379 at 159.977 kb on - strand, within GFF4379 at 159.977 kb on - strand, within GFF4379 at 159.977 kb on - strand, within GFF4379 at 159.981 kb on + strand, within GFF4379 at 160.154 kb on - strand, within GFF4379 at 160.156 kb on - strand, within GFF4379 at 160.179 kb on + strand, within GFF4379 at 160.242 kb on + strand, within GFF4379 at 160.255 kb on + strand, within GFF4379 at 160.255 kb on + strand, within GFF4379 at 160.256 kb on - strand, within GFF4379 at 160.334 kb on + strand, within GFF4379 at 160.338 kb on + strand, within GFF4379 at 160.338 kb on + strand, within GFF4379 at 160.372 kb on + strand, within GFF4379 at 160.381 kb on + strand, within GFF4379 at 160.385 kb on - strand, within GFF4379 at 160.385 kb on - strand, within GFF4379 at 160.819 kb on - strand, within GFF4379 at 160.977 kb on + strand, within GFF4379 at 161.019 kb on - strand, within GFF4379 at 161.032 kb on - strand, within GFF4379 at 161.197 kb on + strand, within GFF4379 at 161.252 kb on - strand, within GFF4379 at 161.353 kb on + strand, within GFF4379 at 161.354 kb on - strand, within GFF4379 at 161.544 kb on + strand, within GFF4379 at 161.545 kb on - strand, within GFF4379 at 161.589 kb on - strand, within GFF4379 at 161.603 kb on - strand, within GFF4379 at 162.182 kb on - strand, within GFF4379 at 162.209 kb on - strand, within GFF4379 at 162.246 kb on - strand, within GFF4379 at 162.379 kb on + strand at 162.380 kb on - strand at 162.380 kb on - strand at 162.380 kb on - strand at 162.380 kb on - strand at 162.380 kb on - strand at 162.380 kb on - strand at 162.381 kb on + strand at 162.381 kb on + strand at 162.381 kb on + strand at 162.381 kb on + strand at 162.382 kb on - strand at 162.382 kb on - strand at 162.382 kb on - strand at 162.382 kb on - strand at 162.434 kb on - strand at 162.634 kb on + strand at 162.708 kb on - strand at 162.727 kb on - strand at 162.967 kb on - strand, within GFF4380 at 163.005 kb on - strand, within GFF4380 at 163.007 kb on + strand, within GFF4380 at 163.189 kb on + strand, within GFF4380 at 163.190 kb on - strand, within GFF4380 at 163.193 kb on + strand, within GFF4380 at 163.193 kb on + strand, within GFF4380 at 163.278 kb on - strand, within GFF4380 at 163.309 kb on + strand, within GFF4380 at 163.323 kb on - strand, within GFF4380 at 163.323 kb on - strand, within GFF4380 at 163.502 kb on + strand, within GFF4380 at 163.513 kb on + strand, within GFF4380 at 163.589 kb on + strand, within GFF4380 at 163.602 kb on - strand, within GFF4380
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 158,698 - GFF4378 0.29 +0.8 158,785 + GFF4378 0.52 +0.5 158,803 + GFF4378 0.57 -0.3 158,934 - +0.1 158,936 - +0.3 158,936 - +1.4 159,018 - -0.0 159,023 + -0.3 159,023 + -0.2 159,755 + -0.1 159,779 - GFF4379 0.10 +0.4 159,782 + GFF4379 0.10 +0.2 159,783 - GFF4379 0.10 -0.1 159,834 + GFF4379 0.12 +0.0 159,835 - GFF4379 0.12 -0.9 159,835 - GFF4379 0.12 -0.6 159,922 + GFF4379 0.15 -0.5 159,936 + GFF4379 0.15 -1.0 159,937 - GFF4379 0.15 -0.6 159,977 - GFF4379 0.16 -0.1 159,977 - GFF4379 0.16 -0.9 159,977 - GFF4379 0.16 -0.2 159,981 + GFF4379 0.17 -2.5 160,154 - GFF4379 0.22 -0.9 160,156 - GFF4379 0.22 -1.1 160,179 + GFF4379 0.23 -0.6 160,242 + GFF4379 0.25 +0.6 160,255 + GFF4379 0.25 -0.7 160,255 + GFF4379 0.25 -0.3 160,256 - GFF4379 0.25 -0.5 160,334 + GFF4379 0.28 -0.2 160,338 + GFF4379 0.28 +3.2 160,338 + GFF4379 0.28 -1.9 160,372 + GFF4379 0.29 -0.3 160,381 + GFF4379 0.29 -1.2 160,385 - GFF4379 0.29 -0.3 160,385 - GFF4379 0.29 -1.4 160,819 - GFF4379 0.43 -0.3 160,977 + GFF4379 0.48 -0.7 161,019 - GFF4379 0.49 -0.2 161,032 - GFF4379 0.50 +0.3 161,197 + GFF4379 0.55 +0.1 161,252 - GFF4379 0.57 -0.7 161,353 + GFF4379 0.60 +1.7 161,354 - GFF4379 0.60 -0.3 161,544 + GFF4379 0.66 -0.6 161,545 - GFF4379 0.66 -0.3 161,589 - GFF4379 0.68 -0.3 161,603 - GFF4379 0.68 -0.2 162,182 - GFF4379 0.86 -0.5 162,209 - GFF4379 0.87 -0.1 162,246 - GFF4379 0.88 -1.2 162,379 + +0.8 162,380 - -0.4 162,380 - -0.9 162,380 - -0.3 162,380 - -0.7 162,380 - -0.2 162,380 - -0.2 162,381 + -0.1 162,381 + +0.1 162,381 + -0.2 162,381 + -0.8 162,382 - -0.3 162,382 - -0.2 162,382 - -0.2 162,382 - -0.3 162,434 - +0.3 162,634 + +0.3 162,708 - +0.1 162,727 - +0.7 162,967 - GFF4380 0.28 -0.0 163,005 - GFF4380 0.31 -1.1 163,007 + GFF4380 0.31 +0.3 163,189 + GFF4380 0.47 +0.2 163,190 - GFF4380 0.47 -0.3 163,193 + GFF4380 0.47 +0.7 163,193 + GFF4380 0.47 -1.0 163,278 - GFF4380 0.54 -0.6 163,309 + GFF4380 0.57 +0.1 163,323 - GFF4380 0.58 -1.4 163,323 - GFF4380 0.58 +0.3 163,502 + GFF4380 0.73 -0.0 163,513 + GFF4380 0.74 -0.6 163,589 + GFF4380 0.80 -1.2 163,602 - GFF4380 0.81 +0.5
Or see this region's nucleotide sequence