Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF435 and GFF436 are separated by 229 nucleotides GFF436 and GFF437 are separated by 116 nucleotides GFF437 and GFF438 are separated by 36 nucleotides
GFF435 - 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130), at 156,441 to 157,439
GFF435
GFF436 - Transcriptional regulator, IclR family, at 157,669 to 158,469
GFF436
GFF437 - Electron transport protein HydN, at 158,586 to 159,059
GFF437
GFF438 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 159,096 to 160,346
GFF438
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.923 kb on + strand, within GFF435 at 156.923 kb on + strand, within GFF435 at 156.923 kb on + strand, within GFF435 at 156.924 kb on - strand, within GFF435 at 156.927 kb on + strand, within GFF435 at 156.927 kb on + strand, within GFF435 at 157.045 kb on + strand, within GFF435 at 157.045 kb on + strand, within GFF435 at 157.104 kb on - strand, within GFF435 at 157.315 kb on + strand, within GFF435 at 157.403 kb on - strand at 157.417 kb on - strand at 157.810 kb on - strand, within GFF436 at 157.849 kb on + strand, within GFF436 at 158.037 kb on + strand, within GFF436 at 158.038 kb on - strand, within GFF436 at 158.092 kb on - strand, within GFF436 at 158.092 kb on - strand, within GFF436 at 158.101 kb on + strand, within GFF436 at 158.101 kb on + strand, within GFF436 at 158.128 kb on - strand, within GFF436 at 158.205 kb on + strand, within GFF436 at 158.205 kb on + strand, within GFF436 at 158.206 kb on - strand, within GFF436 at 158.230 kb on + strand, within GFF436 at 158.230 kb on + strand, within GFF436 at 158.231 kb on - strand, within GFF436 at 158.292 kb on - strand, within GFF436 at 158.305 kb on - strand, within GFF436 at 158.439 kb on + strand at 158.569 kb on - strand at 158.597 kb on + strand at 158.735 kb on + strand, within GFF437 at 158.871 kb on - strand, within GFF437 at 159.121 kb on - strand at 159.121 kb on - strand at 159.175 kb on + strand at 159.175 kb on + strand at 159.175 kb on + strand at 159.176 kb on - strand at 159.236 kb on - strand, within GFF438 at 159.286 kb on - strand, within GFF438 at 159.416 kb on - strand, within GFF438 at 159.418 kb on + strand, within GFF438 at 159.467 kb on + strand, within GFF438
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 156,923 + GFF435 0.48 +0.1 156,923 + GFF435 0.48 +0.8 156,923 + GFF435 0.48 +0.2 156,924 - GFF435 0.48 -0.1 156,927 + GFF435 0.49 +0.0 156,927 + GFF435 0.49 -0.2 157,045 + GFF435 0.60 +0.9 157,045 + GFF435 0.60 +0.2 157,104 - GFF435 0.66 -0.5 157,315 + GFF435 0.87 -0.1 157,403 - +0.6 157,417 - +0.3 157,810 - GFF436 0.18 +0.4 157,849 + GFF436 0.22 -1.2 158,037 + GFF436 0.46 -0.1 158,038 - GFF436 0.46 +0.5 158,092 - GFF436 0.53 -0.7 158,092 - GFF436 0.53 +0.5 158,101 + GFF436 0.54 -0.3 158,101 + GFF436 0.54 -0.3 158,128 - GFF436 0.57 -0.3 158,205 + GFF436 0.67 -1.0 158,205 + GFF436 0.67 -0.7 158,206 - GFF436 0.67 -1.6 158,230 + GFF436 0.70 -2.5 158,230 + GFF436 0.70 -0.6 158,231 - GFF436 0.70 -0.1 158,292 - GFF436 0.78 -1.0 158,305 - GFF436 0.79 -0.3 158,439 + -0.8 158,569 - +0.0 158,597 + +0.2 158,735 + GFF437 0.31 +0.5 158,871 - GFF437 0.60 -0.1 159,121 - +0.0 159,121 - +0.4 159,175 + -0.4 159,175 + -0.1 159,175 + +0.5 159,176 - -0.2 159,236 - GFF438 0.11 +0.2 159,286 - GFF438 0.15 +0.0 159,416 - GFF438 0.26 -0.1 159,418 + GFF438 0.26 +0.1 159,467 + GFF438 0.30 -0.0
Or see this region's nucleotide sequence