Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4353
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
132,538 | - | GFF4352 | 0.51 | -0.8 | |
132,781 | + | GFF4352 | 0.70 | -0.2 | |
133,049 | + | -0.6 | |||
133,067 | + | -0.3 | |||
133,067 | + | -0.2 | |||
133,186 | + | -0.3 | |||
133,518 | - | GFF4353 | 0.28 | +0.0 | |
133,522 | - | GFF4353 | 0.28 | -1.4 | |
133,577 | + | GFF4353 | 0.36 | -3.4 | |
133,577 | + | GFF4353 | 0.36 | -1.9 | |
133,693 | - | GFF4353 | 0.52 | -1.4 | |
133,710 | - | GFF4353 | 0.54 | -2.3 | |
133,737 | - | GFF4353 | 0.58 | -2.8 | |
133,964 | + | GFF4353 | 0.89 | -0.1 | |
134,007 | + | -2.3 | |||
134,007 | + | -2.3 | |||
134,007 | + | -4.0 | |||
134,071 | + | -0.4 | |||
134,129 | - | -0.8 | |||
134,132 | + | -0.9 | |||
134,136 | + | -0.6 | |||
134,136 | + | -0.4 | |||
134,194 | + | -0.4 | |||
134,195 | - | -0.7 | |||
134,196 | + | +0.0 | |||
134,196 | + | +0.1 | |||
134,196 | + | -0.2 | |||
134,196 | + | -1.2 | |||
134,199 | + | -0.4 | |||
134,200 | - | -2.3 | |||
134,401 | + | -3.8 | |||
134,401 | + | -1.8 | |||
134,429 | - | GFF4354 | 0.10 | -1.7 | |
134,525 | + | GFF4354 | 0.18 | -2.3 | |
134,630 | - | GFF4354 | 0.26 | -0.9 | |
134,719 | + | GFF4354 | 0.33 | -3.6 | |
135,010 | - | GFF4354 | 0.56 | -4.1 | |
135,013 | + | GFF4354 | 0.56 | -3.7 |
Or see this region's nucleotide sequence