Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4349 and GFF4350 are separated by 7 nucleotides GFF4350 and GFF4351 are separated by 122 nucleotides GFF4351 and GFF4352 are separated by 346 nucleotides GFF4352 and GFF4353 are separated by 138 nucleotides
GFF4349 - Hypothetical lipoprotein YajG precursor, at 130,331 to 130,963
GFF4349
GFF4350 - hypothetical protein, at 130,971 to 131,090
GFF4350
GFF4351 - Cell division protein BolA, at 131,213 to 131,530
GFF4351
GFF4352 - Cell division trigger factor (EC 5.2.1.8), at 131,877 to 133,175
GFF4352
GFF4353 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 133,314 to 134,045
GFF4353
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 131.013 kb on - strand, within GFF4350 at 131.166 kb on + strand at 131.167 kb on - strand at 131.220 kb on + strand at 131.220 kb on + strand at 131.221 kb on - strand at 131.233 kb on - strand at 131.393 kb on + strand, within GFF4351 at 131.427 kb on + strand, within GFF4351 at 131.428 kb on - strand, within GFF4351 at 131.428 kb on - strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.450 kb on + strand, within GFF4351 at 131.450 kb on + strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.453 kb on - strand, within GFF4351 at 131.482 kb on + strand, within GFF4351 at 131.485 kb on + strand, within GFF4351 at 131.548 kb on + strand at 131.548 kb on + strand at 131.549 kb on - strand at 131.740 kb on + strand at 131.741 kb on - strand at 131.741 kb on - strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.820 kb on + strand at 131.996 kb on + strand at 131.996 kb on + strand at 131.997 kb on - strand at 132.151 kb on - strand, within GFF4352 at 132.190 kb on - strand, within GFF4352 at 132.311 kb on + strand, within GFF4352 at 132.538 kb on - strand, within GFF4352 at 132.781 kb on + strand, within GFF4352 at 133.049 kb on + strand at 133.067 kb on + strand at 133.067 kb on + strand at 133.186 kb on + strand at 133.518 kb on - strand, within GFF4353 at 133.522 kb on - strand, within GFF4353 at 133.577 kb on + strand, within GFF4353 at 133.577 kb on + strand, within GFF4353 at 133.693 kb on - strand, within GFF4353 at 133.710 kb on - strand, within GFF4353 at 133.737 kb on - strand, within GFF4353 at 133.964 kb on + strand, within GFF4353 at 134.007 kb on + strand at 134.007 kb on + strand at 134.007 kb on + strand at 134.071 kb on + strand at 134.129 kb on - strand at 134.132 kb on + strand at 134.136 kb on + strand at 134.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 131,013 - GFF4350 0.35 -0.9 131,166 + -0.1 131,167 - -0.2 131,220 + -0.0 131,220 + -0.7 131,221 - +0.2 131,233 - +0.2 131,393 + GFF4351 0.57 -0.3 131,427 + GFF4351 0.67 +0.0 131,428 - GFF4351 0.68 -0.7 131,428 - GFF4351 0.68 -0.7 131,446 + GFF4351 0.73 -0.5 131,446 + GFF4351 0.73 +0.2 131,446 + GFF4351 0.73 -0.5 131,446 + GFF4351 0.73 +0.0 131,447 - GFF4351 0.74 +0.9 131,447 - GFF4351 0.74 -0.2 131,447 - GFF4351 0.74 +0.1 131,450 + GFF4351 0.75 +0.2 131,450 + GFF4351 0.75 +0.1 131,451 - GFF4351 0.75 +0.2 131,451 - GFF4351 0.75 +0.4 131,451 - GFF4351 0.75 +0.1 131,451 - GFF4351 0.75 +0.1 131,453 - GFF4351 0.75 +0.1 131,482 + GFF4351 0.85 +0.2 131,485 + GFF4351 0.86 +1.2 131,548 + +0.3 131,548 + +0.4 131,549 - +0.1 131,740 + -0.1 131,741 - -0.4 131,741 - -0.4 131,742 + +0.9 131,743 - -0.6 131,743 - -1.1 131,820 + -0.8 131,996 + +0.1 131,996 + +0.2 131,997 - -2.4 132,151 - GFF4352 0.21 -0.1 132,190 - GFF4352 0.24 -0.3 132,311 + GFF4352 0.33 -1.2 132,538 - GFF4352 0.51 -0.8 132,781 + GFF4352 0.70 -0.2 133,049 + -0.6 133,067 + -0.3 133,067 + -0.2 133,186 + -0.3 133,518 - GFF4353 0.28 +0.0 133,522 - GFF4353 0.28 -1.4 133,577 + GFF4353 0.36 -3.4 133,577 + GFF4353 0.36 -1.9 133,693 - GFF4353 0.52 -1.4 133,710 - GFF4353 0.54 -2.3 133,737 - GFF4353 0.58 -2.8 133,964 + GFF4353 0.89 -0.1 134,007 + -2.3 134,007 + -2.3 134,007 + -4.0 134,071 + -0.4 134,129 - -0.8 134,132 + -0.9 134,136 + -0.6 134,136 + -0.4
Or see this region's nucleotide sequence