Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4348 and GFF4349 are separated by 43 nucleotides GFF4349 and GFF4350 are separated by 7 nucleotides GFF4350 and GFF4351 are separated by 122 nucleotides GFF4351 and GFF4352 are separated by 346 nucleotides
GFF4348 - AmpG permease, at 128,812 to 130,287
GFF4348
GFF4349 - Hypothetical lipoprotein YajG precursor, at 130,331 to 130,963
GFF4349
GFF4350 - hypothetical protein, at 130,971 to 131,090
GFF4350
GFF4351 - Cell division protein BolA, at 131,213 to 131,530
GFF4351
GFF4352 - Cell division trigger factor (EC 5.2.1.8), at 131,877 to 133,175
GFF4352
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1 at 130.057 kb on + strand, within GFF4348 at 130.105 kb on - strand, within GFF4348 at 130.112 kb on + strand, within GFF4348 at 130.113 kb on - strand, within GFF4348 at 130.183 kb on + strand at 130.274 kb on + strand at 130.287 kb on + strand at 130.288 kb on - strand at 130.288 kb on - strand at 130.296 kb on - strand at 130.330 kb on - strand at 130.381 kb on + strand at 130.382 kb on - strand at 130.382 kb on - strand at 130.435 kb on + strand, within GFF4349 at 130.465 kb on - strand, within GFF4349 at 130.465 kb on - strand, within GFF4349 at 130.579 kb on - strand, within GFF4349 at 130.596 kb on - strand, within GFF4349 at 130.596 kb on - strand, within GFF4349 at 130.631 kb on - strand, within GFF4349 at 130.632 kb on + strand, within GFF4349 at 130.633 kb on - strand, within GFF4349 at 130.633 kb on - strand, within GFF4349 at 130.670 kb on + strand, within GFF4349 at 130.671 kb on - strand, within GFF4349 at 131.013 kb on - strand, within GFF4350 at 131.166 kb on + strand at 131.167 kb on - strand at 131.220 kb on + strand at 131.220 kb on + strand at 131.221 kb on - strand at 131.233 kb on - strand at 131.393 kb on + strand, within GFF4351 at 131.427 kb on + strand, within GFF4351 at 131.428 kb on - strand, within GFF4351 at 131.428 kb on - strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.446 kb on + strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.447 kb on - strand, within GFF4351 at 131.450 kb on + strand, within GFF4351 at 131.450 kb on + strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.451 kb on - strand, within GFF4351 at 131.453 kb on - strand, within GFF4351 at 131.482 kb on + strand, within GFF4351 at 131.485 kb on + strand, within GFF4351 at 131.548 kb on + strand at 131.548 kb on + strand at 131.549 kb on - strand at 131.740 kb on + strand at 131.741 kb on - strand at 131.741 kb on - strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.820 kb on + strand at 131.996 kb on + strand at 131.996 kb on + strand at 131.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 130,057 + GFF4348 0.84 +0.1 130,105 - GFF4348 0.88 -0.9 130,112 + GFF4348 0.88 +0.9 130,113 - GFF4348 0.88 +0.6 130,183 + +0.7 130,274 + -0.6 130,287 + +0.6 130,288 - +0.2 130,288 - -0.8 130,296 - +0.8 130,330 - -0.1 130,381 + +0.6 130,382 - -0.3 130,382 - -0.2 130,435 + GFF4349 0.16 +1.4 130,465 - GFF4349 0.21 -0.7 130,465 - GFF4349 0.21 -0.5 130,579 - GFF4349 0.39 -0.2 130,596 - GFF4349 0.42 +0.1 130,596 - GFF4349 0.42 +0.3 130,631 - GFF4349 0.47 +1.5 130,632 + GFF4349 0.48 +0.1 130,633 - GFF4349 0.48 +0.0 130,633 - GFF4349 0.48 -0.1 130,670 + GFF4349 0.54 +0.4 130,671 - GFF4349 0.54 -0.0 131,013 - GFF4350 0.35 -0.9 131,166 + -0.1 131,167 - -0.2 131,220 + -0.0 131,220 + -0.7 131,221 - +0.2 131,233 - +0.2 131,393 + GFF4351 0.57 -0.3 131,427 + GFF4351 0.67 +0.0 131,428 - GFF4351 0.68 -0.7 131,428 - GFF4351 0.68 -0.7 131,446 + GFF4351 0.73 -0.5 131,446 + GFF4351 0.73 +0.2 131,446 + GFF4351 0.73 -0.5 131,446 + GFF4351 0.73 +0.0 131,447 - GFF4351 0.74 +0.9 131,447 - GFF4351 0.74 -0.2 131,447 - GFF4351 0.74 +0.1 131,450 + GFF4351 0.75 +0.2 131,450 + GFF4351 0.75 +0.1 131,451 - GFF4351 0.75 +0.2 131,451 - GFF4351 0.75 +0.4 131,451 - GFF4351 0.75 +0.1 131,451 - GFF4351 0.75 +0.1 131,453 - GFF4351 0.75 +0.1 131,482 + GFF4351 0.85 +0.2 131,485 + GFF4351 0.86 +1.2 131,548 + +0.3 131,548 + +0.4 131,549 - +0.1 131,740 + -0.1 131,741 - -0.4 131,741 - -0.4 131,742 + +0.9 131,743 - -0.6 131,743 - -1.1 131,820 + -0.8 131,996 + +0.1 131,996 + +0.2 131,997 - -2.4
Or see this region's nucleotide sequence