Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF426 and GFF427 overlap by 7 nucleotides GFF427 and GFF428 overlap by 8 nucleotides GFF428 and GFF429 overlap by 4 nucleotides
GFF426 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4), at 148,418 to 149,113
GFF426
GFF427 - L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) homolog, at 149,107 to 149,967
GFF427
GFF428 - 3-keto-L-gulonate 6-phosphate decarboxylase homolog, at 149,960 to 150,622
GFF428
GFF429 - L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-), at 150,619 to 152,115
GFF429
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 149.109 kb on - strand at 149.427 kb on - strand, within GFF427 at 149.607 kb on - strand, within GFF427 at 149.607 kb on - strand, within GFF427 at 149.610 kb on - strand, within GFF427 at 149.950 kb on + strand at 149.951 kb on - strand at 150.219 kb on + strand, within GFF428 at 150.367 kb on + strand, within GFF428 at 150.368 kb on - strand, within GFF428 at 150.609 kb on - strand at 150.658 kb on + strand at 150.659 kb on - strand at 150.659 kb on - strand at 150.785 kb on - strand, within GFF429 at 150.999 kb on - strand, within GFF429 at 150.999 kb on - strand, within GFF429 at 151.230 kb on + strand, within GFF429 at 151.230 kb on + strand, within GFF429 at 151.232 kb on + strand, within GFF429 at 151.233 kb on - strand, within GFF429 at 151.260 kb on - strand, within GFF429 at 151.265 kb on + strand, within GFF429 at 151.265 kb on + strand, within GFF429 at 151.265 kb on + strand, within GFF429 at 151.544 kb on + strand, within GFF429 at 151.566 kb on - strand, within GFF429
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 149,109 - +0.6 149,427 - GFF427 0.37 -0.2 149,607 - GFF427 0.58 +0.4 149,607 - GFF427 0.58 -0.4 149,610 - GFF427 0.58 +0.4 149,950 + +0.3 149,951 - -0.0 150,219 + GFF428 0.39 +1.1 150,367 + GFF428 0.61 +0.2 150,368 - GFF428 0.62 +0.0 150,609 - +0.4 150,658 + -0.4 150,659 - -0.4 150,659 - -0.0 150,785 - GFF429 0.11 +0.6 150,999 - GFF429 0.25 -0.1 150,999 - GFF429 0.25 +0.0 151,230 + GFF429 0.41 -0.5 151,230 + GFF429 0.41 -0.2 151,232 + GFF429 0.41 +0.1 151,233 - GFF429 0.41 +0.1 151,260 - GFF429 0.43 -0.8 151,265 + GFF429 0.43 +0.3 151,265 + GFF429 0.43 +0.1 151,265 + GFF429 0.43 -0.1 151,544 + GFF429 0.62 +0.7 151,566 - GFF429 0.63 -0.9
Or see this region's nucleotide sequence