Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4246 and GFF4247 overlap by 4 nucleotides GFF4247 and GFF4248 are separated by 276 nucleotides
GFF4246 - RND efflux system, inner membrane transporter CmeB, at 24,105 to 27,272
GFF4246
GFF4247 - RND efflux system, membrane fusion protein CmeA, at 27,269 to 28,495
GFF4247
GFF4248 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 28,772 to 31,060
GFF4248
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 26.427 kb on + strand, within GFF4246 at 26.439 kb on + strand, within GFF4246 at 26.441 kb on + strand, within GFF4246 at 26.443 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.801 kb on + strand, within GFF4246 at 26.810 kb on - strand, within GFF4246 at 27.036 kb on - strand at 27.036 kb on - strand at 27.037 kb on + strand at 27.484 kb on - strand, within GFF4247 at 27.519 kb on + strand, within GFF4247 at 27.705 kb on - strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.829 kb on - strand, within GFF4247 at 27.851 kb on - strand, within GFF4247 at 27.914 kb on + strand, within GFF4247 at 27.950 kb on - strand, within GFF4247 at 28.125 kb on - strand, within GFF4247 at 28.139 kb on + strand, within GFF4247 at 28.140 kb on - strand, within GFF4247 at 28.330 kb on + strand, within GFF4247 at 28.346 kb on - strand, within GFF4247 at 28.413 kb on - strand at 28.432 kb on - strand at 28.475 kb on - strand at 28.489 kb on + strand at 28.489 kb on + strand at 28.490 kb on - strand at 28.636 kb on + strand at 28.751 kb on - strand at 28.809 kb on + strand at 28.810 kb on - strand at 28.810 kb on - strand at 28.813 kb on + strand at 28.822 kb on + strand at 28.822 kb on + strand at 28.979 kb on - strand at 28.992 kb on + strand at 29.125 kb on + strand, within GFF4248 at 29.135 kb on - strand, within GFF4248 at 29.376 kb on - strand, within GFF4248 at 29.378 kb on + strand, within GFF4248 at 29.465 kb on - strand, within GFF4248
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 26,427 + GFF4246 0.73 +0.4 26,439 + GFF4246 0.74 +0.3 26,441 + GFF4246 0.74 +0.2 26,443 + GFF4246 0.74 -0.0 26,628 + GFF4246 0.80 +0.7 26,628 + GFF4246 0.80 +0.4 26,628 + GFF4246 0.80 -0.1 26,628 + GFF4246 0.80 -1.6 26,801 + GFF4246 0.85 -0.2 26,810 - GFF4246 0.85 +0.8 27,036 - +0.9 27,036 - +0.3 27,037 + -0.1 27,484 - GFF4247 0.18 -0.3 27,519 + GFF4247 0.20 +0.0 27,705 - GFF4247 0.36 -1.5 27,828 + GFF4247 0.46 -0.3 27,828 + GFF4247 0.46 -0.3 27,828 + GFF4247 0.46 -0.1 27,828 + GFF4247 0.46 +0.2 27,829 - GFF4247 0.46 -0.6 27,851 - GFF4247 0.47 -0.8 27,914 + GFF4247 0.53 -0.9 27,950 - GFF4247 0.56 -2.1 28,125 - GFF4247 0.70 -1.3 28,139 + GFF4247 0.71 -0.3 28,140 - GFF4247 0.71 +0.0 28,330 + GFF4247 0.86 +0.4 28,346 - GFF4247 0.88 +0.7 28,413 - -0.7 28,432 - -0.4 28,475 - -0.1 28,489 + -0.4 28,489 + -0.2 28,490 - +0.0 28,636 + +0.0 28,751 - -0.2 28,809 + +0.3 28,810 - -0.1 28,810 - -0.5 28,813 + -0.9 28,822 + +0.1 28,822 + +0.4 28,979 - -0.3 28,992 + +0.2 29,125 + GFF4248 0.15 +0.4 29,135 - GFF4248 0.16 -0.0 29,376 - GFF4248 0.26 +0.3 29,378 + GFF4248 0.26 +0.2 29,465 - GFF4248 0.30 -1.3
Or see this region's nucleotide sequence