Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4222 and GFF4223 are separated by 131 nucleotides GFF4223 and GFF4224 are separated by 1 nucleotides GFF4224 and GFF4225 are separated by 14 nucleotides
GFF4222 - putative permease, at 1,621 to 2,853
GFF4222
GFF4223 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 2,985 to 4,406
GFF4223
GFF4224 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 4,408 to 5,034
GFF4224
GFF4225 - Fumarylacetoacetate hydrolase family protein, at 5,049 to 5,927
GFF4225
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -1
0
1 at 1.997 kb on - strand, within GFF4222 at 2.073 kb on + strand, within GFF4222 at 2.378 kb on - strand, within GFF4222 at 2.378 kb on - strand, within GFF4222 at 2.378 kb on - strand, within GFF4222 at 2.434 kb on + strand, within GFF4222 at 2.482 kb on - strand, within GFF4222 at 2.482 kb on - strand, within GFF4222 at 3.093 kb on + strand at 3.211 kb on + strand, within GFF4223 at 3.394 kb on - strand, within GFF4223 at 3.496 kb on + strand, within GFF4223 at 3.514 kb on + strand, within GFF4223 at 3.539 kb on + strand, within GFF4223 at 3.719 kb on + strand, within GFF4223 at 3.719 kb on + strand, within GFF4223 at 3.723 kb on + strand, within GFF4223 at 3.851 kb on + strand, within GFF4223 at 4.022 kb on + strand, within GFF4223 at 4.139 kb on - strand, within GFF4223 at 4.380 kb on - strand at 4.480 kb on - strand, within GFF4224 at 4.667 kb on + strand, within GFF4224 at 4.703 kb on + strand, within GFF4224 at 4.704 kb on - strand, within GFF4224 at 4.735 kb on - strand, within GFF4224 at 4.828 kb on - strand, within GFF4224 at 4.952 kb on - strand, within GFF4224 at 4.987 kb on + strand at 5.096 kb on + strand at 5.146 kb on - strand, within GFF4225 at 5.198 kb on - strand, within GFF4225
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,997 - GFF4222 0.30 -0.2 2,073 + GFF4222 0.37 -0.6 2,378 - GFF4222 0.61 -0.9 2,378 - GFF4222 0.61 +0.5 2,378 - GFF4222 0.61 +0.1 2,434 + GFF4222 0.66 +0.4 2,482 - GFF4222 0.70 -0.1 2,482 - GFF4222 0.70 -0.8 3,093 + -0.2 3,211 + GFF4223 0.16 -0.1 3,394 - GFF4223 0.29 +1.4 3,496 + GFF4223 0.36 +0.2 3,514 + GFF4223 0.37 -0.3 3,539 + GFF4223 0.39 -0.3 3,719 + GFF4223 0.52 +0.0 3,719 + GFF4223 0.52 +0.3 3,723 + GFF4223 0.52 +0.4 3,851 + GFF4223 0.61 +1.4 4,022 + GFF4223 0.73 +0.3 4,139 - GFF4223 0.81 +0.0 4,380 - -0.4 4,480 - GFF4224 0.11 +0.3 4,667 + GFF4224 0.41 +0.2 4,703 + GFF4224 0.47 +0.9 4,704 - GFF4224 0.47 +0.4 4,735 - GFF4224 0.52 +0.3 4,828 - GFF4224 0.67 +0.2 4,952 - GFF4224 0.87 -0.5 4,987 + +0.4 5,096 + +0.3 5,146 - GFF4225 0.11 +0.0 5,198 - GFF4225 0.17 +0.0
Or see this region's nucleotide sequence