Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF414 and GFF415 are separated by 290 nucleotides GFF415 and GFF416 are separated by 9 nucleotides GFF416 and GFF417 overlap by 4 nucleotides
GFF414 - FIG00638433: Hypothetical protein YibL, at 133,067 to 133,429
GFF414
GFF415 - FIG074102: hypothetical protein, at 133,720 to 133,929
GFF415
GFF416 - Mannitol operon repressor, at 133,939 to 134,529
GFF416
GFF417 - Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17), at 134,526 to 135,674
GFF417
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 132.963 kb on + strand at 132.965 kb on + strand at 132.978 kb on + strand at 133.265 kb on + strand, within GFF414 at 133.265 kb on + strand, within GFF414 at 133.265 kb on + strand, within GFF414 at 133.283 kb on - strand, within GFF414 at 133.295 kb on + strand, within GFF414 at 133.296 kb on - strand, within GFF414 at 133.326 kb on + strand, within GFF414 at 133.375 kb on + strand, within GFF414 at 133.455 kb on + strand at 133.460 kb on - strand at 133.460 kb on - strand at 133.466 kb on + strand at 133.467 kb on - strand at 133.470 kb on - strand at 133.507 kb on - strand at 133.674 kb on - strand at 133.716 kb on + strand at 133.716 kb on + strand at 133.828 kb on + strand, within GFF415 at 133.828 kb on + strand, within GFF415 at 134.045 kb on + strand, within GFF416 at 134.148 kb on - strand, within GFF416 at 134.148 kb on - strand, within GFF416 at 134.208 kb on - strand, within GFF416 at 134.237 kb on + strand, within GFF416 at 134.242 kb on - strand, within GFF416 at 134.242 kb on - strand, within GFF416 at 134.242 kb on - strand, within GFF416 at 134.255 kb on - strand, within GFF416 at 134.306 kb on + strand, within GFF416 at 134.319 kb on - strand, within GFF416 at 134.464 kb on + strand, within GFF416 at 134.475 kb on + strand at 134.476 kb on - strand at 134.670 kb on - strand, within GFF417 at 134.710 kb on - strand, within GFF417 at 134.710 kb on - strand, within GFF417 at 134.725 kb on + strand, within GFF417 at 134.796 kb on + strand, within GFF417 at 134.857 kb on + strand, within GFF417 at 134.858 kb on - strand, within GFF417 at 135.011 kb on + strand, within GFF417 at 135.011 kb on + strand, within GFF417 at 135.011 kb on + strand, within GFF417 at 135.012 kb on - strand, within GFF417 at 135.041 kb on + strand, within GFF417 at 135.041 kb on - strand, within GFF417 at 135.108 kb on - strand, within GFF417 at 135.108 kb on - strand, within GFF417 at 135.197 kb on + strand, within GFF417 at 135.326 kb on + strand, within GFF417 at 135.327 kb on - strand, within GFF417 at 135.393 kb on - strand, within GFF417 at 135.430 kb on - strand, within GFF417 at 135.430 kb on - strand, within GFF417 at 135.430 kb on - strand, within GFF417
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 132,963 + +1.5 132,965 + -0.1 132,978 + -0.1 133,265 + GFF414 0.55 +0.1 133,265 + GFF414 0.55 -1.1 133,265 + GFF414 0.55 -0.4 133,283 - GFF414 0.60 +0.0 133,295 + GFF414 0.63 +0.2 133,296 - GFF414 0.63 +0.7 133,326 + GFF414 0.71 -0.2 133,375 + GFF414 0.85 -0.1 133,455 + -0.1 133,460 - -0.8 133,460 - -0.4 133,466 + +0.7 133,467 - +0.1 133,470 - +0.1 133,507 - +0.1 133,674 - -0.4 133,716 + -0.8 133,716 + -0.3 133,828 + GFF415 0.51 -0.1 133,828 + GFF415 0.51 +0.1 134,045 + GFF416 0.18 -0.9 134,148 - GFF416 0.35 -0.4 134,148 - GFF416 0.35 -1.3 134,208 - GFF416 0.46 -1.5 134,237 + GFF416 0.50 -0.7 134,242 - GFF416 0.51 -1.2 134,242 - GFF416 0.51 -1.3 134,242 - GFF416 0.51 -0.8 134,255 - GFF416 0.53 -2.2 134,306 + GFF416 0.62 -1.1 134,319 - GFF416 0.64 -0.6 134,464 + GFF416 0.89 -1.2 134,475 + -0.3 134,476 - -0.1 134,670 - GFF417 0.13 -0.0 134,710 - GFF417 0.16 -0.5 134,710 - GFF417 0.16 -0.2 134,725 + GFF417 0.17 -1.5 134,796 + GFF417 0.23 -1.8 134,857 + GFF417 0.29 -0.4 134,858 - GFF417 0.29 +0.1 135,011 + GFF417 0.42 -2.6 135,011 + GFF417 0.42 -2.4 135,011 + GFF417 0.42 -1.9 135,012 - GFF417 0.42 -1.7 135,041 + GFF417 0.45 -3.6 135,041 - GFF417 0.45 -0.4 135,108 - GFF417 0.51 -1.0 135,108 - GFF417 0.51 -0.5 135,197 + GFF417 0.58 -0.7 135,326 + GFF417 0.70 -3.1 135,327 - GFF417 0.70 +0.1 135,393 - GFF417 0.75 -0.1 135,430 - GFF417 0.79 +0.1 135,430 - GFF417 0.79 -1.0 135,430 - GFF417 0.79 -0.5
Or see this region's nucleotide sequence