Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4088 and GFF4089 are separated by 0 nucleotides GFF4089 and GFF4090 are separated by 336 nucleotides GFF4090 and GFF4091 are separated by 110 nucleotides
GFF4088 - hypothetical protein, at 47,561 to 47,686
GFF4088
GFF4089 - hypothetical protein, at 47,687 to 47,818
GFF4089
GFF4090 - Periplasmic fimbrial chaperone protein, at 48,155 to 48,952
GFF4090
GFF4091 - FIG034929: Fimbriae usher protein SafC, at 49,063 to 51,486
GFF4091
Position (kb) 48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 47.942 kb on + strand at 48.051 kb on - strand at 48.152 kb on - strand at 48.268 kb on + strand, within GFF4090 at 48.280 kb on - strand, within GFF4090 at 48.313 kb on + strand, within GFF4090 at 48.574 kb on + strand, within GFF4090 at 48.665 kb on - strand, within GFF4090 at 48.817 kb on + strand, within GFF4090 at 48.817 kb on + strand, within GFF4090 at 48.830 kb on + strand, within GFF4090 at 48.830 kb on + strand, within GFF4090 at 48.830 kb on + strand, within GFF4090 at 48.831 kb on - strand, within GFF4090 at 48.863 kb on - strand, within GFF4090 at 48.902 kb on - strand at 48.947 kb on - strand at 49.092 kb on + strand at 49.092 kb on + strand at 49.092 kb on + strand at 49.093 kb on - strand at 49.116 kb on - strand at 49.132 kb on + strand at 49.159 kb on - strand at 49.280 kb on - strand at 49.477 kb on + strand, within GFF4091 at 49.515 kb on + strand, within GFF4091 at 49.515 kb on + strand, within GFF4091 at 49.566 kb on + strand, within GFF4091 at 49.568 kb on + strand, within GFF4091 at 49.642 kb on + strand, within GFF4091 at 49.643 kb on - strand, within GFF4091 at 49.643 kb on - strand, within GFF4091 at 49.644 kb on + strand, within GFF4091 at 49.645 kb on - strand, within GFF4091 at 49.645 kb on - strand, within GFF4091 at 49.645 kb on - strand, within GFF4091 at 49.648 kb on + strand, within GFF4091 at 49.666 kb on + strand, within GFF4091 at 49.666 kb on + strand, within GFF4091 at 49.666 kb on + strand, within GFF4091 at 49.719 kb on - strand, within GFF4091 at 49.719 kb on - strand, within GFF4091 at 49.923 kb on + strand, within GFF4091 at 49.923 kb on + strand, within GFF4091
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 47,942 + +0.2 48,051 - -0.3 48,152 - -0.1 48,268 + GFF4090 0.14 -0.3 48,280 - GFF4090 0.16 -0.2 48,313 + GFF4090 0.20 -0.7 48,574 + GFF4090 0.53 -0.0 48,665 - GFF4090 0.64 -0.1 48,817 + GFF4090 0.83 -0.7 48,817 + GFF4090 0.83 -0.1 48,830 + GFF4090 0.85 -1.2 48,830 + GFF4090 0.85 +0.1 48,830 + GFF4090 0.85 +0.2 48,831 - GFF4090 0.85 +0.0 48,863 - GFF4090 0.89 +0.0 48,902 - -1.1 48,947 - +0.6 49,092 + -0.8 49,092 + +0.2 49,092 + +0.3 49,093 - -1.1 49,116 - -0.2 49,132 + +0.2 49,159 - +0.3 49,280 - -0.1 49,477 + GFF4091 0.17 -0.2 49,515 + GFF4091 0.19 -0.8 49,515 + GFF4091 0.19 -0.2 49,566 + GFF4091 0.21 +0.1 49,568 + GFF4091 0.21 +0.5 49,642 + GFF4091 0.24 +0.1 49,643 - GFF4091 0.24 -0.9 49,643 - GFF4091 0.24 -2.1 49,644 + GFF4091 0.24 +0.3 49,645 - GFF4091 0.24 -1.1 49,645 - GFF4091 0.24 -0.6 49,645 - GFF4091 0.24 -0.0 49,648 + GFF4091 0.24 -0.1 49,666 + GFF4091 0.25 +0.5 49,666 + GFF4091 0.25 -0.3 49,666 + GFF4091 0.25 -0.2 49,719 - GFF4091 0.27 -0.7 49,719 - GFF4091 0.27 +0.0 49,923 + GFF4091 0.35 +0.4 49,923 + GFF4091 0.35 -0.1
Or see this region's nucleotide sequence