Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4049 and GFF4050 overlap by 4 nucleotides GFF4050 and GFF4051 are separated by 15 nucleotides GFF4051 and GFF4052 overlap by 4 nucleotides
GFF4049 - Uncharacterized protein ImpH/VasB, at 11,141 to 12,136
GFF4049
GFF4050 - Protein ImpG/VasA, at 12,133 to 14,016
GFF4050
GFF4051 - Uncharacterized protein ImpF, at 14,032 to 14,526
GFF4051
GFF4052 - Protein of avirulence locus ImpE, at 14,523 to 15,347
GFF4052
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -1
0
1 at 11.137 kb on - strand at 11.320 kb on + strand, within GFF4049 at 11.402 kb on - strand, within GFF4049 at 11.555 kb on + strand, within GFF4049 at 11.566 kb on - strand, within GFF4049 at 11.703 kb on + strand, within GFF4049 at 11.916 kb on + strand, within GFF4049 at 11.917 kb on - strand, within GFF4049 at 12.047 kb on - strand at 12.219 kb on + strand at 12.243 kb on + strand at 12.245 kb on + strand at 12.246 kb on - strand at 12.246 kb on - strand at 12.273 kb on - strand at 12.335 kb on + strand, within GFF4050 at 12.622 kb on + strand, within GFF4050 at 12.623 kb on - strand, within GFF4050 at 12.654 kb on + strand, within GFF4050 at 12.954 kb on - strand, within GFF4050 at 13.126 kb on + strand, within GFF4050 at 13.127 kb on - strand, within GFF4050 at 13.196 kb on + strand, within GFF4050 at 13.380 kb on + strand, within GFF4050 at 13.380 kb on + strand, within GFF4050 at 13.380 kb on + strand, within GFF4050 at 13.384 kb on + strand, within GFF4050 at 13.384 kb on + strand, within GFF4050 at 13.384 kb on + strand, within GFF4050 at 13.385 kb on - strand, within GFF4050 at 13.430 kb on + strand, within GFF4050 at 13.769 kb on + strand, within GFF4050 at 13.883 kb on + strand at 13.973 kb on + strand at 13.974 kb on - strand at 13.992 kb on - strand at 14.030 kb on + strand at 14.134 kb on + strand, within GFF4051 at 14.142 kb on + strand, within GFF4051 at 14.144 kb on + strand, within GFF4051 at 14.144 kb on + strand, within GFF4051 at 14.144 kb on + strand, within GFF4051 at 14.144 kb on + strand, within GFF4051 at 14.145 kb on - strand, within GFF4051 at 14.145 kb on - strand, within GFF4051 at 14.267 kb on + strand, within GFF4051 at 14.268 kb on - strand, within GFF4051 at 14.268 kb on - strand, within GFF4051 at 14.272 kb on - strand, within GFF4051 at 14.272 kb on - strand, within GFF4051 at 14.272 kb on - strand, within GFF4051 at 14.508 kb on + strand at 14.818 kb on - strand, within GFF4052 at 14.843 kb on - strand, within GFF4052
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 11,137 - -0.1 11,320 + GFF4049 0.18 +0.0 11,402 - GFF4049 0.26 -0.6 11,555 + GFF4049 0.42 +0.3 11,566 - GFF4049 0.43 -0.3 11,703 + GFF4049 0.56 +0.0 11,916 + GFF4049 0.78 -1.4 11,917 - GFF4049 0.78 -1.3 12,047 - +0.5 12,219 + +0.2 12,243 + +0.1 12,245 + +0.2 12,246 - -0.0 12,246 - -0.8 12,273 - +0.2 12,335 + GFF4050 0.11 +0.6 12,622 + GFF4050 0.26 -0.6 12,623 - GFF4050 0.26 +1.1 12,654 + GFF4050 0.28 +0.5 12,954 - GFF4050 0.44 +0.3 13,126 + GFF4050 0.53 +0.3 13,127 - GFF4050 0.53 +0.7 13,196 + GFF4050 0.56 -0.6 13,380 + GFF4050 0.66 +0.6 13,380 + GFF4050 0.66 +0.6 13,380 + GFF4050 0.66 +0.7 13,384 + GFF4050 0.66 -0.0 13,384 + GFF4050 0.66 +0.1 13,384 + GFF4050 0.66 -0.6 13,385 - GFF4050 0.66 +1.5 13,430 + GFF4050 0.69 +0.3 13,769 + GFF4050 0.87 -0.0 13,883 + -0.1 13,973 + -0.7 13,974 - -0.0 13,992 - -0.3 14,030 + -0.1 14,134 + GFF4051 0.21 -1.0 14,142 + GFF4051 0.22 +0.7 14,144 + GFF4051 0.23 -1.1 14,144 + GFF4051 0.23 -0.7 14,144 + GFF4051 0.23 -0.1 14,144 + GFF4051 0.23 +0.5 14,145 - GFF4051 0.23 +0.4 14,145 - GFF4051 0.23 -0.2 14,267 + GFF4051 0.47 +1.1 14,268 - GFF4051 0.48 +0.7 14,268 - GFF4051 0.48 +0.1 14,272 - GFF4051 0.48 -0.5 14,272 - GFF4051 0.48 -0.9 14,272 - GFF4051 0.48 +0.1 14,508 + -0.0 14,818 - GFF4052 0.36 -1.3 14,843 - GFF4052 0.39 -0.1
Or see this region's nucleotide sequence