Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF405

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF404 and GFF405 are separated by 73 nucleotidesGFF405 and GFF406 are separated by 267 nucleotides GFF404 - D-glucarate permease, at 119,043 to 120,353 GFF404 GFF405 - L-talarate dehydratase @ Galactarate dehydratase (EC 4.2.1.42), at 120,427 to 121,623 GFF405 GFF406 - Transcriptional regulator, LacI family, at 121,891 to 122,946 GFF406 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1at 119.433 kb on - strand, within GFF404at 119.560 kb on + strand, within GFF404at 119.595 kb on - strand, within GFF404at 119.693 kb on + strand, within GFF404at 120.052 kb on + strand, within GFF404at 120.053 kb on - strand, within GFF404at 120.058 kb on + strand, within GFF404at 120.058 kb on + strand, within GFF404at 120.172 kb on + strand, within GFF404at 120.172 kb on + strand, within GFF404at 120.240 kb on + strandat 120.342 kb on + strandat 120.358 kb on + strandat 120.654 kb on + strand, within GFF405at 120.654 kb on + strand, within GFF405at 120.734 kb on - strand, within GFF405at 120.811 kb on - strand, within GFF405at 120.860 kb on - strand, within GFF405at 120.880 kb on - strand, within GFF405at 120.880 kb on - strand, within GFF405at 120.880 kb on - strand, within GFF405at 121.005 kb on + strand, within GFF405at 121.104 kb on + strand, within GFF405at 121.192 kb on - strand, within GFF405at 121.230 kb on + strand, within GFF405at 121.231 kb on - strand, within GFF405at 121.291 kb on + strand, within GFF405at 121.325 kb on - strand, within GFF405at 121.337 kb on - strand, within GFF405at 121.355 kb on + strand, within GFF405at 121.356 kb on - strand, within GFF405at 121.356 kb on - strand, within GFF405at 121.360 kb on - strand, within GFF405at 121.386 kb on - strand, within GFF405at 121.478 kb on - strand, within GFF405at 121.525 kb on + strandat 121.573 kb on - strandat 121.589 kb on + strandat 121.615 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.725 kb on + strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.726 kb on - strandat 121.735 kb on - strandat 121.848 kb on - strandat 121.880 kb on + strandat 121.881 kb on - strandat 122.099 kb on - strand, within GFF406at 122.148 kb on - strand, within GFF406at 122.241 kb on - strand, within GFF406at 122.260 kb on + strand, within GFF406at 122.348 kb on + strand, within GFF406at 122.473 kb on + strand, within GFF406at 122.474 kb on - strand, within GFF406at 122.553 kb on - strand, within GFF406at 122.553 kb on - strand, within GFF406at 122.556 kb on + strand, within GFF406at 122.556 kb on + strand, within GFF406at 122.557 kb on - strand, within GFF406

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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119,433 - GFF404 0.30 +0.1
119,560 + GFF404 0.39 -0.8
119,595 - GFF404 0.42 +0.1
119,693 + GFF404 0.50 -0.5
120,052 + GFF404 0.77 +0.2
120,053 - GFF404 0.77 -0.7
120,058 + GFF404 0.77 +0.1
120,058 + GFF404 0.77 -1.0
120,172 + GFF404 0.86 +0.5
120,172 + GFF404 0.86 +0.2
120,240 + +0.5
120,342 + -1.5
120,358 + -0.1
120,654 + GFF405 0.19 +0.1
120,654 + GFF405 0.19 +0.3
120,734 - GFF405 0.26 -0.7
120,811 - GFF405 0.32 -0.0
120,860 - GFF405 0.36 +0.9
120,880 - GFF405 0.38 -0.3
120,880 - GFF405 0.38 +0.1
120,880 - GFF405 0.38 +0.3
121,005 + GFF405 0.48 -0.2
121,104 + GFF405 0.57 -0.2
121,192 - GFF405 0.64 +0.5
121,230 + GFF405 0.67 -0.1
121,231 - GFF405 0.67 +0.1
121,291 + GFF405 0.72 -0.1
121,325 - GFF405 0.75 -0.6
121,337 - GFF405 0.76 -0.6
121,355 + GFF405 0.78 +0.4
121,356 - GFF405 0.78 +0.0
121,356 - GFF405 0.78 -0.2
121,360 - GFF405 0.78 -0.0
121,386 - GFF405 0.80 -0.4
121,478 - GFF405 0.88 +0.1
121,525 + +0.2
121,573 - +0.3
121,589 + +0.2
121,615 + +0.2
121,725 + -0.0
121,725 + +0.1
121,725 + -0.3
121,725 + -0.3
121,725 + +0.3
121,725 + +0.4
121,725 + +0.2
121,726 - +0.0
121,726 - -0.0
121,726 - +1.2
121,726 - +0.2
121,726 - -0.3
121,726 - +0.1
121,726 - +0.2
121,735 - +0.2
121,848 - -0.8
121,880 + +0.3
121,881 - +0.0
122,099 - GFF406 0.20 -0.2
122,148 - GFF406 0.24 +0.1
122,241 - GFF406 0.33 -0.1
122,260 + GFF406 0.35 -0.4
122,348 + GFF406 0.43 +0.1
122,473 + GFF406 0.55 -0.2
122,474 - GFF406 0.55 +0.3
122,553 - GFF406 0.63 +0.3
122,553 - GFF406 0.63 -0.0
122,556 + GFF406 0.63 +0.6
122,556 + GFF406 0.63 -0.4
122,557 - GFF406 0.63 -0.1

Or see this region's nucleotide sequence