Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4025 and GFF4026 are separated by 71 nucleotides GFF4026 and GFF4027 overlap by 1 nucleotides GFF4027 and GFF4028 are separated by 14 nucleotides GFF4028 and GFF4029 are separated by 256 nucleotides
GFF4025 - Cytoplasmic alpha-amylase (EC 3.2.1.1), at 291,702 to 293,186
GFF4025
GFF4026 - Flagellar biosynthesis protein FliT, at 293,258 to 293,626
GFF4026
GFF4027 - Flagellar biosynthesis protein FliS, at 293,626 to 294,033
GFF4027
GFF4028 - Flagellar hook-associated protein FliD, at 294,048 to 295,451
GFF4028
GFF4029 - Flagellar biosynthesis protein FliC, at 295,708 to 297,195
GFF4029
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1 at 293.356 kb on + strand, within GFF4026 at 293.356 kb on + strand, within GFF4026 at 293.357 kb on - strand, within GFF4026 at 293.588 kb on - strand, within GFF4026 at 293.683 kb on - strand, within GFF4027 at 293.769 kb on - strand, within GFF4027 at 294.063 kb on - strand at 294.090 kb on - strand at 294.450 kb on - strand, within GFF4028 at 294.459 kb on - strand, within GFF4028 at 295.059 kb on - strand, within GFF4028 at 295.167 kb on - strand, within GFF4028 at 295.167 kb on - strand, within GFF4028 at 295.167 kb on - strand, within GFF4028 at 295.167 kb on - strand, within GFF4028 at 295.169 kb on - strand, within GFF4028 at 295.645 kb on + strand at 295.688 kb on + strand at 295.722 kb on + strand at 296.395 kb on + strand, within GFF4029
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 293,356 + GFF4026 0.27 -1.6 293,356 + GFF4026 0.27 -1.2 293,357 - GFF4026 0.27 -0.1 293,588 - GFF4026 0.89 +0.5 293,683 - GFF4027 0.14 -1.3 293,769 - GFF4027 0.35 -2.1 294,063 - -0.1 294,090 - -0.5 294,450 - GFF4028 0.29 -0.1 294,459 - GFF4028 0.29 -0.1 295,059 - GFF4028 0.72 -0.6 295,167 - GFF4028 0.80 -0.9 295,167 - GFF4028 0.80 -0.2 295,167 - GFF4028 0.80 -1.3 295,167 - GFF4028 0.80 -0.4 295,169 - GFF4028 0.80 -0.1 295,645 + +0.0 295,688 + +0.3 295,722 + +0.1 296,395 + GFF4029 0.46 -0.5
Or see this region's nucleotide sequence