Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF40

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF38 and GFF39 are separated by 71 nucleotidesGFF39 and GFF40 overlap by 4 nucleotidesGFF40 and GFF41 overlap by 1 nucleotidesGFF41 and GFF42 are separated by 3 nucleotides GFF38 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 16,059 to 19,493 GFF38 GFF39 - Ribonuclease HII (EC 3.1.26.4), at 19,565 to 20,161 GFF39 GFF40 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 20,158 to 21,306 GFF40 GFF41 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase (EC 2.3.1.129), at 21,306 to 22,094 GFF41 GFF42 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59), at 22,098 to 22,553 GFF42 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1at 19.754 kb on - strand, within GFF39at 19.865 kb on - strand, within GFF39

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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19,754 - GFF39 0.32 -0.4
19,865 - GFF39 0.50 +0.3

Or see this region's nucleotide sequence