Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3967 and GFF3968 overlap by 4 nucleotides GFF3968 and GFF3969 are separated by 26 nucleotides GFF3969 and GFF3970 are separated by 77 nucleotides
GFF3967 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 245,168 to 245,713
GFF3967
GFF3968 - Cobalamin synthase (EC 2.7.8.26), at 245,710 to 246,453
GFF3968
GFF3969 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 246,480 to 247,550
GFF3969
GFF3970 - L,D-transpeptidase YbiS, at 247,628 to 248,557
GFF3970
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.559 kb on + strand, within GFF3967 at 245.849 kb on + strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.222 kb on - strand, within GFF3968 at 246.259 kb on - strand, within GFF3968 at 246.303 kb on + strand, within GFF3968 at 246.366 kb on + strand, within GFF3968 at 246.450 kb on - strand at 246.479 kb on + strand at 246.479 kb on + strand at 246.480 kb on - strand at 246.490 kb on + strand at 246.554 kb on + strand at 246.635 kb on + strand, within GFF3969 at 246.853 kb on + strand, within GFF3969 at 246.854 kb on - strand, within GFF3969 at 246.858 kb on - strand, within GFF3969 at 246.860 kb on + strand, within GFF3969 at 246.861 kb on - strand, within GFF3969 at 247.253 kb on - strand, within GFF3969 at 247.402 kb on - strand, within GFF3969 at 247.424 kb on - strand, within GFF3969 at 247.514 kb on + strand at 247.514 kb on + strand at 247.625 kb on - strand at 247.626 kb on + strand at 247.692 kb on + strand at 247.692 kb on + strand at 247.693 kb on - strand at 247.776 kb on + strand, within GFF3970 at 247.817 kb on - strand, within GFF3970 at 247.919 kb on - strand, within GFF3970 at 247.949 kb on + strand, within GFF3970 at 247.986 kb on + strand, within GFF3970 at 247.990 kb on + strand, within GFF3970 at 248.105 kb on - strand, within GFF3970 at 248.173 kb on - strand, within GFF3970 at 248.173 kb on - strand, within GFF3970 at 248.174 kb on + strand, within GFF3970 at 248.174 kb on + strand, within GFF3970 at 248.175 kb on - strand, within GFF3970 at 248.176 kb on + strand, within GFF3970 at 248.188 kb on - strand, within GFF3970 at 248.190 kb on - strand, within GFF3970 at 248.249 kb on - strand, within GFF3970 at 248.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 245,559 + GFF3967 0.72 -0.0 245,849 + GFF3968 0.19 +0.1 246,182 - GFF3968 0.63 -0.1 246,182 - GFF3968 0.63 +0.0 246,222 - GFF3968 0.69 +0.1 246,259 - GFF3968 0.74 +1.0 246,303 + GFF3968 0.80 +1.0 246,366 + GFF3968 0.88 -0.2 246,450 - -0.1 246,479 + -0.5 246,479 + +0.4 246,480 - +0.6 246,490 + +0.1 246,554 + +0.1 246,635 + GFF3969 0.14 +0.1 246,853 + GFF3969 0.35 -2.5 246,854 - GFF3969 0.35 +1.9 246,858 - GFF3969 0.35 +0.4 246,860 + GFF3969 0.35 +1.1 246,861 - GFF3969 0.36 +0.4 247,253 - GFF3969 0.72 -0.5 247,402 - GFF3969 0.86 -0.2 247,424 - GFF3969 0.88 +0.3 247,514 + -0.4 247,514 + -0.2 247,625 - +0.4 247,626 + -0.3 247,692 + +0.1 247,692 + +0.3 247,693 - -0.5 247,776 + GFF3970 0.16 +0.2 247,817 - GFF3970 0.20 +0.7 247,919 - GFF3970 0.31 -0.1 247,949 + GFF3970 0.35 -0.3 247,986 + GFF3970 0.38 -0.2 247,990 + GFF3970 0.39 -0.4 248,105 - GFF3970 0.51 +0.3 248,173 - GFF3970 0.59 -0.1 248,173 - GFF3970 0.59 +0.4 248,174 + GFF3970 0.59 +0.0 248,174 + GFF3970 0.59 -0.2 248,175 - GFF3970 0.59 -0.3 248,176 + GFF3970 0.59 -0.4 248,188 - GFF3970 0.60 -0.6 248,190 - GFF3970 0.60 -0.7 248,249 - GFF3970 0.67 +0.3 248,479 + -0.4
Or see this region's nucleotide sequence