Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3962 and GFF3963 are separated by 1 nucleotides GFF3963 and GFF3964 overlap by 14 nucleotides GFF3964 and GFF3965 are separated by 8 nucleotides GFF3965 and GFF3966 overlap by 4 nucleotides
GFF3962 - Substrate-specific component CbiM of cobalt ECF transporter, at 241,146 to 241,883
GFF3962
GFF3963 - Additional substrate-specific component CbiN of cobalt ECF transporter, at 241,885 to 242,166
GFF3963
GFF3964 - Transmembrane component CbiQ of energizing module of cobalt ECF transporter, at 242,153 to 242,830
GFF3964
GFF3965 - ATPase component CbiO of energizing module of cobalt ECF transporter, at 242,839 to 243,654
GFF3965
GFF3966 - Cobyric acid synthase (EC 6.3.5.10), at 243,651 to 245,171
GFF3966
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 242.019 kb on + strand, within GFF3963 at 242.019 kb on + strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.039 kb on + strand, within GFF3963 at 242.241 kb on + strand, within GFF3964 at 242.323 kb on - strand, within GFF3964 at 242.393 kb on - strand, within GFF3964 at 242.436 kb on + strand, within GFF3964 at 242.551 kb on - strand, within GFF3964 at 242.828 kb on + strand at 242.835 kb on + strand at 242.838 kb on + strand at 242.839 kb on - strand at 242.889 kb on + strand at 242.897 kb on + strand at 242.970 kb on + strand, within GFF3965 at 243.141 kb on + strand, within GFF3965 at 243.307 kb on + strand, within GFF3965 at 243.311 kb on + strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.408 kb on + strand, within GFF3965 at 243.409 kb on - strand, within GFF3965 at 243.409 kb on - strand, within GFF3965 at 243.432 kb on + strand, within GFF3965 at 243.457 kb on + strand, within GFF3965 at 243.461 kb on + strand, within GFF3965 at 243.665 kb on + strand at 243.719 kb on - strand at 243.749 kb on + strand at 243.773 kb on + strand at 243.783 kb on - strand at 243.969 kb on + strand, within GFF3966 at 243.972 kb on - strand, within GFF3966 at 244.005 kb on + strand, within GFF3966 at 244.006 kb on - strand, within GFF3966 at 244.027 kb on - strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.219 kb on + strand, within GFF3966 at 244.233 kb on - strand, within GFF3966 at 244.266 kb on + strand, within GFF3966 at 244.267 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.454 kb on + strand, within GFF3966 at 244.491 kb on + strand, within GFF3966
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 242,019 + GFF3963 0.48 +0.1 242,019 + GFF3963 0.48 -0.5 242,020 - GFF3963 0.48 +0.0 242,020 - GFF3963 0.48 +1.5 242,039 + GFF3963 0.55 +0.3 242,241 + GFF3964 0.13 -0.0 242,323 - GFF3964 0.25 -0.4 242,393 - GFF3964 0.35 -0.3 242,436 + GFF3964 0.42 -0.2 242,551 - GFF3964 0.59 +0.0 242,828 + -0.2 242,835 + +0.4 242,838 + -0.1 242,839 - +0.7 242,889 + +0.2 242,897 + +0.1 242,970 + GFF3965 0.16 +0.4 243,141 + GFF3965 0.37 +0.4 243,307 + GFF3965 0.57 +1.0 243,311 + GFF3965 0.58 -0.0 243,312 - GFF3965 0.58 +0.1 243,312 - GFF3965 0.58 -1.8 243,312 - GFF3965 0.58 +1.0 243,408 + GFF3965 0.70 +0.7 243,409 - GFF3965 0.70 +0.1 243,409 - GFF3965 0.70 +0.6 243,432 + GFF3965 0.73 +0.3 243,457 + GFF3965 0.76 +0.9 243,461 + GFF3965 0.76 +0.1 243,665 + +0.9 243,719 - -0.3 243,749 + -0.1 243,773 + -0.4 243,783 - -0.0 243,969 + GFF3966 0.21 -0.7 243,972 - GFF3966 0.21 -0.5 244,005 + GFF3966 0.23 -0.2 244,006 - GFF3966 0.23 -0.0 244,027 - GFF3966 0.25 +0.4 244,034 + GFF3966 0.25 -0.3 244,034 + GFF3966 0.25 +1.1 244,034 + GFF3966 0.25 -0.1 244,219 + GFF3966 0.37 +0.5 244,233 - GFF3966 0.38 +0.4 244,266 + GFF3966 0.40 +0.2 244,267 - GFF3966 0.40 -0.1 244,434 - GFF3966 0.51 +0.4 244,434 - GFF3966 0.51 +1.2 244,434 - GFF3966 0.51 -0.4 244,434 - GFF3966 0.51 +0.1 244,454 + GFF3966 0.53 -0.8 244,491 + GFF3966 0.55 +0.1
Or see this region's nucleotide sequence