Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3953 and GFF3954 overlap by 7 nucleotides GFF3954 and GFF3955 overlap by 11 nucleotides GFF3955 and GFF3956 overlap by 17 nucleotides
GFF3953 - Cobalt-precorrin-6 synthase, anaerobic, at 234,030 to 235,169
GFF3953
GFF3954 - Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-), at 235,163 to 235,768
GFF3954
GFF3955 - Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-), at 235,758 to 236,336
GFF3955
GFF3956 - Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133), at 236,320 to 237,093
GFF3956
Position (kb) 235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 234.200 kb on - strand, within GFF3953 at 234.670 kb on + strand, within GFF3953 at 234.870 kb on - strand, within GFF3953 at 234.907 kb on + strand, within GFF3953 at 234.908 kb on - strand, within GFF3953 at 234.913 kb on + strand, within GFF3953 at 235.008 kb on - strand, within GFF3953 at 235.012 kb on - strand, within GFF3953 at 235.012 kb on - strand, within GFF3953 at 235.110 kb on - strand at 235.115 kb on + strand at 235.152 kb on - strand at 235.303 kb on + strand, within GFF3954 at 235.475 kb on + strand, within GFF3954 at 235.475 kb on + strand, within GFF3954 at 235.475 kb on + strand, within GFF3954 at 235.476 kb on - strand, within GFF3954 at 236.266 kb on - strand, within GFF3955 at 236.349 kb on - strand at 236.394 kb on + strand at 236.427 kb on - strand, within GFF3956 at 236.430 kb on + strand, within GFF3956 at 236.434 kb on + strand, within GFF3956 at 236.470 kb on + strand, within GFF3956 at 236.610 kb on - strand, within GFF3956 at 236.643 kb on + strand, within GFF3956 at 236.658 kb on - strand, within GFF3956 at 236.658 kb on - strand, within GFF3956 at 236.712 kb on + strand, within GFF3956 at 236.713 kb on - strand, within GFF3956 at 236.743 kb on - strand, within GFF3956 at 236.763 kb on + strand, within GFF3956
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 234,200 - GFF3953 0.15 -0.3 234,670 + GFF3953 0.56 -0.1 234,870 - GFF3953 0.74 -0.3 234,907 + GFF3953 0.77 +0.3 234,908 - GFF3953 0.77 -0.3 234,913 + GFF3953 0.77 +0.5 235,008 - GFF3953 0.86 -0.0 235,012 - GFF3953 0.86 +0.3 235,012 - GFF3953 0.86 +0.5 235,110 - +0.4 235,115 + +0.2 235,152 - -0.3 235,303 + GFF3954 0.23 -0.1 235,475 + GFF3954 0.51 -1.2 235,475 + GFF3954 0.51 -0.4 235,475 + GFF3954 0.51 -0.3 235,476 - GFF3954 0.52 -0.8 236,266 - GFF3955 0.88 +0.0 236,349 - +0.1 236,394 + +0.6 236,427 - GFF3956 0.14 -1.4 236,430 + GFF3956 0.14 -0.0 236,434 + GFF3956 0.15 +0.3 236,470 + GFF3956 0.19 -0.8 236,610 - GFF3956 0.37 -0.4 236,643 + GFF3956 0.42 -2.2 236,658 - GFF3956 0.44 +0.1 236,658 - GFF3956 0.44 +0.6 236,712 + GFF3956 0.51 -0.4 236,713 - GFF3956 0.51 +1.5 236,743 - GFF3956 0.55 +0.3 236,763 + GFF3956 0.57 +0.8
Or see this region's nucleotide sequence