Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3949 and GFF3950 are separated by 597 nucleotides GFF3950 and GFF3951 overlap by 4 nucleotides GFF3951 and GFF3952 are separated by 10 nucleotides
GFF3949 - Propanediol utilization transcriptional activator, at 229,543 to 230,454
GFF3949
GFF3950 - Cobyrinic acid A,C-diamide synthase, at 231,052 to 232,431
GFF3950
GFF3951 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 232,428 to 233,387
GFF3951
GFF3952 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 233,398 to 234,030
GFF3952
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 230.118 kb on + strand, within GFF3949 at 230.210 kb on - strand, within GFF3949 at 230.578 kb on + strand at 230.749 kb on + strand at 230.752 kb on + strand at 230.752 kb on + strand at 230.788 kb on + strand at 230.988 kb on - strand at 231.020 kb on - strand at 231.208 kb on - strand, within GFF3950 at 231.337 kb on + strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.365 kb on - strand, within GFF3950 at 231.590 kb on - strand, within GFF3950 at 231.834 kb on + strand, within GFF3950 at 231.841 kb on + strand, within GFF3950 at 231.965 kb on + strand, within GFF3950 at 231.968 kb on - strand, within GFF3950 at 232.066 kb on + strand, within GFF3950 at 232.169 kb on - strand, within GFF3950 at 232.244 kb on - strand, within GFF3950 at 232.287 kb on + strand, within GFF3950 at 232.427 kb on + strand at 232.594 kb on + strand, within GFF3951 at 233.046 kb on + strand, within GFF3951 at 233.145 kb on + strand, within GFF3951 at 233.148 kb on - strand, within GFF3951 at 233.156 kb on + strand, within GFF3951 at 233.225 kb on + strand, within GFF3951 at 233.225 kb on + strand, within GFF3951 at 233.397 kb on + strand at 233.398 kb on - strand at 233.398 kb on - strand at 233.398 kb on - strand at 233.404 kb on + strand at 233.404 kb on + strand at 233.405 kb on - strand at 233.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 230,118 + GFF3949 0.63 -0.6 230,210 - GFF3949 0.73 +0.7 230,578 + +0.1 230,749 + -0.5 230,752 + -3.7 230,752 + +0.2 230,788 + -0.1 230,988 - -0.1 231,020 - +0.3 231,208 - GFF3950 0.11 +0.1 231,337 + GFF3950 0.21 -0.5 231,338 - GFF3950 0.21 -0.8 231,338 - GFF3950 0.21 -0.8 231,338 - GFF3950 0.21 -0.2 231,338 - GFF3950 0.21 +0.3 231,365 - GFF3950 0.23 -0.2 231,590 - GFF3950 0.39 -0.2 231,834 + GFF3950 0.57 +0.2 231,841 + GFF3950 0.57 +0.5 231,965 + GFF3950 0.66 -0.1 231,968 - GFF3950 0.66 -0.2 232,066 + GFF3950 0.73 -0.3 232,169 - GFF3950 0.81 -0.8 232,244 - GFF3950 0.86 -0.3 232,287 + GFF3950 0.89 +0.6 232,427 + -0.7 232,594 + GFF3951 0.17 +0.0 233,046 + GFF3951 0.64 -0.9 233,145 + GFF3951 0.75 -0.1 233,148 - GFF3951 0.75 -0.4 233,156 + GFF3951 0.76 +0.1 233,225 + GFF3951 0.83 +0.4 233,225 + GFF3951 0.83 -0.1 233,397 + -0.4 233,398 - +0.1 233,398 - -1.8 233,398 - -1.9 233,404 + -0.5 233,404 + -0.5 233,405 - -0.4 233,407 - -0.7
Or see this region's nucleotide sequence