Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF392
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
105,927 | + | GFF391 | 0.14 | -2.7 | |
105,957 | + | GFF391 | 0.17 | -3.1 | |
106,223 | + | GFF391 | 0.42 | -0.8 | |
106,686 | + | GFF391 | 0.86 | -0.4 | |
106,832 | - | +0.8 | |||
106,832 | - | +0.4 | |||
106,832 | - | -0.6 | |||
106,887 | - | +0.4 | |||
106,992 | - | GFF392 | 0.17 | -1.1 | |
107,126 | - | GFF392 | 0.32 | +1.2 | |
107,252 | - | GFF392 | 0.45 | -0.4 | |
107,404 | + | GFF392 | 0.62 | -1.2 | |
107,426 | - | GFF392 | 0.64 | -2.2 | |
107,482 | + | GFF392 | 0.70 | +0.2 | |
107,583 | - | GFF392 | 0.81 | -0.2 | |
107,781 | - | -0.3 | |||
107,822 | - | +0.8 | |||
107,827 | + | +0.2 | |||
107,869 | + | +1.0 | |||
107,930 | + | -0.4 | |||
107,931 | - | -0.3 | |||
108,048 | + | +0.1 | |||
108,096 | + | GFF393 | 0.11 | -0.4 | |
108,115 | - | GFF393 | 0.13 | +0.1 | |
108,118 | + | GFF393 | 0.13 | +2.0 | |
108,118 | + | GFF393 | 0.13 | -0.4 | |
108,118 | + | GFF393 | 0.13 | -2.1 | |
108,118 | + | GFF393 | 0.13 | -0.3 | |
108,151 | - | GFF393 | 0.16 | +0.1 | |
108,286 | + | GFF393 | 0.27 | -1.1 | |
108,349 | - | GFF393 | 0.32 | -0.0 | |
108,378 | + | GFF393 | 0.35 | +0.2 | |
108,378 | - | GFF393 | 0.35 | +0.8 | |
108,379 | - | GFF393 | 0.35 | +0.2 | |
108,422 | - | GFF393 | 0.38 | +0.4 | |
108,668 | + | GFF393 | 0.59 | -0.5 | |
108,668 | + | GFF393 | 0.59 | +0.4 | |
108,669 | - | GFF393 | 0.59 | -0.7 | |
108,672 | + | GFF393 | 0.59 | -0.2 | |
108,673 | - | GFF393 | 0.59 | -0.2 | |
108,673 | - | GFF393 | 0.59 | -0.3 | |
108,676 | - | GFF393 | 0.59 | -0.3 |
Or see this region's nucleotide sequence