Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3887 and GFF3888 overlap by 1 nucleotides GFF3888 and GFF3889 are separated by 41 nucleotides GFF3889 and GFF3890 are separated by 3 nucleotides
GFF3887 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 166,273 to 167,358
GFF3887
GFF3888 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 167,358 to 168,257
GFF3888
GFF3889 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 168,299 to 169,183
GFF3889
GFF3890 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 169,187 to 169,735
GFF3890
Position (kb) 167
168
169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 166.585 kb on + strand, within GFF3887 at 166.612 kb on + strand, within GFF3887 at 166.764 kb on + strand, within GFF3887 at 166.825 kb on + strand, within GFF3887 at 166.857 kb on + strand, within GFF3887 at 166.860 kb on + strand, within GFF3887 at 166.864 kb on + strand, within GFF3887 at 166.864 kb on + strand, within GFF3887 at 166.973 kb on + strand, within GFF3887 at 166.975 kb on + strand, within GFF3887 at 166.976 kb on - strand, within GFF3887 at 166.976 kb on - strand, within GFF3887 at 167.004 kb on + strand, within GFF3887 at 167.082 kb on - strand, within GFF3887 at 167.086 kb on - strand, within GFF3887 at 167.149 kb on + strand, within GFF3887 at 167.150 kb on - strand, within GFF3887 at 167.150 kb on - strand, within GFF3887 at 167.341 kb on + strand at 167.368 kb on + strand at 167.510 kb on + strand, within GFF3888 at 167.557 kb on + strand, within GFF3888 at 167.673 kb on + strand, within GFF3888 at 167.828 kb on + strand, within GFF3888 at 167.828 kb on + strand, within GFF3888 at 168.043 kb on + strand, within GFF3888 at 168.095 kb on + strand, within GFF3888 at 168.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 166,585 + GFF3887 0.29 -3.5 166,612 + GFF3887 0.31 -3.3 166,764 + GFF3887 0.45 -3.5 166,825 + GFF3887 0.51 -1.4 166,857 + GFF3887 0.54 -2.0 166,860 + GFF3887 0.54 -2.2 166,864 + GFF3887 0.54 -2.6 166,864 + GFF3887 0.54 -3.9 166,973 + GFF3887 0.64 -2.6 166,975 + GFF3887 0.65 -2.9 166,976 - GFF3887 0.65 -4.1 166,976 - GFF3887 0.65 -2.8 167,004 + GFF3887 0.67 -2.8 167,082 - GFF3887 0.74 -3.0 167,086 - GFF3887 0.75 -1.9 167,149 + GFF3887 0.81 -3.1 167,150 - GFF3887 0.81 +0.4 167,150 - GFF3887 0.81 -3.1 167,341 + +0.4 167,368 + -1.4 167,510 + GFF3888 0.17 -4.1 167,557 + GFF3888 0.22 -1.8 167,673 + GFF3888 0.35 -2.5 167,828 + GFF3888 0.52 -2.3 167,828 + GFF3888 0.52 -4.4 168,043 + GFF3888 0.76 -3.8 168,095 + GFF3888 0.82 -3.7 168,264 + +0.3
Or see this region's nucleotide sequence