Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3780

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
47,458	-		GFF3779	0.57	-0.2
47,585	+		GFF3779	0.63	+0.6
47,709	-		GFF3779	0.70	+0.0
47,869	+		GFF3779	0.78	-0.2
47,869	+		GFF3779	0.78	-1.6
47,870	-		GFF3779	0.78	-0.0
47,959	+		GFF3779	0.82	+0.9
47,959	+		GFF3779	0.82	+0.9
47,959	+		GFF3779	0.82	-0.3
47,960	-		GFF3779	0.83	+0.3
47,960	-		GFF3779	0.83	-0.8
47,960	-		GFF3779	0.83	-0.6
47,961	+		GFF3779	0.83	+0.1
48,076	+		GFF3779	0.88	-0.0
48,091	+		GFF3779	0.89	+0.2
48,251	-				-0.4
48,347	+				+0.8
48,411	+				+0.8
48,412	-				-0.7
48,415	+				-0.5
48,416	-				-0.0
48,417	+				+0.4
48,579	+		GFF3780	0.18	+0.3
48,624	+		GFF3780	0.21	+0.7
48,663	-		GFF3780	0.24	-0.6
48,663	-		GFF3780	0.24	+0.0
48,733	-		GFF3780	0.29	+0.6
48,797	+		GFF3780	0.34	-0.2
48,889	+		GFF3780	0.41	+0.1
48,920	-		GFF3780	0.44	-0.4
48,921	+		GFF3780	0.44	-0.6
48,922	-		GFF3780	0.44	-0.2
49,022	+		GFF3780	0.51	+0.0
49,028	-		GFF3780	0.52	-0.2
49,028	-		GFF3780	0.52	+0.2
49,049	-		GFF3780	0.53	-0.1
49,049	-		GFF3780	0.53	-0.1
49,235	-		GFF3780	0.67	-0.4
49,453	+		GFF3780	0.84	+0.0
49,875	+		GFF3781	0.20	+1.8
50,099	-		GFF3781	0.45	+0.1
50,436	+		GFF3781	0.83	+0.2