Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3733

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3733 and GFF3734 are separated by 231 nucleotidesGFF3734 and GFF3735 are separated by 317 nucleotides GFF3733 - Phage tail fiber protein, at 140 to 931 GFF3733 GFF3734 - Phage tail fibers, at 1,163 to 1,282 GFF3734 GFF3735 - Secreted effector protein, at 1,600 to 3,966 GFF3735 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.337 kb on + strand, within GFF3733at 0.803 kb on + strand, within GFF3733at 0.804 kb on - strand, within GFF3733at 0.838 kb on + strand, within GFF3733at 1.106 kb on - strandat 1.167 kb on + strandat 1.574 kb on - strandat 1.574 kb on - strandat 1.574 kb on - strandat 1.919 kb on + strand, within GFF3735at 1.919 kb on + strand, within GFF3735

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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337 + GFF3733 0.25 -0.7
803 + GFF3733 0.84 -3.2
804 - GFF3733 0.84 -0.6
838 + GFF3733 0.88 -1.1
1,106 - +0.3
1,167 + -0.1
1,574 - -0.7
1,574 - +0.2
1,574 - -0.0
1,919 + GFF3735 0.13 +0.3
1,919 + GFF3735 0.13 -0.1

Or see this region's nucleotide sequence