Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3695 and GFF3696 are separated by 194 nucleotides GFF3696 and GFF3697 overlap by 4 nucleotides
GFF3695 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 48,431 to 49,633
GFF3695
GFF3696 - Integrase, at 49,828 to 51,168
GFF3696
GFF3697 - Phage excisionase, at 51,165 to 51,413
GFF3697
Position (kb) 49
50
51
52 Strain fitness (log2 ratio) -1
0
1 at 48.853 kb on + strand, within GFF3695 at 48.853 kb on + strand, within GFF3695 at 49.071 kb on - strand, within GFF3695 at 49.178 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695 at 49.355 kb on - strand, within GFF3695 at 49.485 kb on + strand, within GFF3695 at 49.486 kb on - strand, within GFF3695 at 49.486 kb on - strand, within GFF3695 at 49.542 kb on + strand at 49.543 kb on - strand at 49.581 kb on + strand at 49.633 kb on + strand at 49.633 kb on + strand at 49.703 kb on - strand at 50.024 kb on + strand, within GFF3696 at 50.024 kb on + strand, within GFF3696 at 50.025 kb on - strand, within GFF3696 at 50.029 kb on - strand, within GFF3696 at 50.288 kb on + strand, within GFF3696 at 50.288 kb on + strand, within GFF3696 at 50.290 kb on + strand, within GFF3696 at 50.290 kb on + strand, within GFF3696 at 50.291 kb on - strand, within GFF3696 at 50.304 kb on + strand, within GFF3696 at 50.389 kb on - strand, within GFF3696 at 50.436 kb on - strand, within GFF3696 at 50.436 kb on - strand, within GFF3696 at 50.627 kb on + strand, within GFF3696 at 50.627 kb on + strand, within GFF3696 at 50.628 kb on - strand, within GFF3696 at 50.628 kb on - strand, within GFF3696 at 50.720 kb on + strand, within GFF3696 at 50.720 kb on + strand, within GFF3696 at 50.721 kb on - strand, within GFF3696 at 50.805 kb on + strand, within GFF3696 at 50.806 kb on - strand, within GFF3696 at 50.940 kb on + strand, within GFF3696 at 51.046 kb on - strand at 51.046 kb on - strand at 51.052 kb on - strand at 51.053 kb on + strand at 51.054 kb on - strand at 51.235 kb on + strand, within GFF3697 at 51.235 kb on + strand, within GFF3697 at 51.238 kb on - strand, within GFF3697 at 51.238 kb on - strand, within GFF3697 at 51.238 kb on - strand, within GFF3697 at 51.287 kb on - strand, within GFF3697
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 48,853 + GFF3695 0.35 -0.6 48,853 + GFF3695 0.35 +0.5 49,071 - GFF3695 0.53 +0.1 49,178 - GFF3695 0.62 -0.2 49,277 - GFF3695 0.70 -0.1 49,277 - GFF3695 0.70 -0.8 49,310 - GFF3695 0.73 -0.2 49,310 - GFF3695 0.73 -0.3 49,355 - GFF3695 0.77 -0.5 49,485 + GFF3695 0.88 +0.1 49,486 - GFF3695 0.88 +0.4 49,486 - GFF3695 0.88 +0.6 49,542 + -0.1 49,543 - -0.9 49,581 + +0.3 49,633 + +1.4 49,633 + +1.0 49,703 - +0.4 50,024 + GFF3696 0.15 -0.1 50,024 + GFF3696 0.15 +0.3 50,025 - GFF3696 0.15 -0.1 50,029 - GFF3696 0.15 +0.1 50,288 + GFF3696 0.34 +0.2 50,288 + GFF3696 0.34 +1.1 50,290 + GFF3696 0.34 +0.2 50,290 + GFF3696 0.34 +0.0 50,291 - GFF3696 0.35 +0.8 50,304 + GFF3696 0.35 +0.1 50,389 - GFF3696 0.42 +0.6 50,436 - GFF3696 0.45 -0.5 50,436 - GFF3696 0.45 +1.0 50,627 + GFF3696 0.60 +0.2 50,627 + GFF3696 0.60 -1.0 50,628 - GFF3696 0.60 +0.4 50,628 - GFF3696 0.60 +1.0 50,720 + GFF3696 0.67 +0.4 50,720 + GFF3696 0.67 +0.5 50,721 - GFF3696 0.67 +0.5 50,805 + GFF3696 0.73 -0.1 50,806 - GFF3696 0.73 +0.2 50,940 + GFF3696 0.83 +0.9 51,046 - +0.2 51,046 - +0.3 51,052 - -0.2 51,053 + +0.0 51,054 - -0.5 51,235 + GFF3697 0.28 +0.2 51,235 + GFF3697 0.28 +0.3 51,238 - GFF3697 0.29 +0.3 51,238 - GFF3697 0.29 +0.2 51,238 - GFF3697 0.29 +0.2 51,287 - GFF3697 0.49 +0.3
Or see this region's nucleotide sequence