Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3630 and GFF3631 are separated by 2 nucleotides GFF3631 and GFF3632 are separated by 353 nucleotides GFF3632 and GFF3633 are separated by 47 nucleotides GFF3633 and GFF3634 are separated by 271 nucleotides
GFF3630 - Putative membrane protein, at 380,639 to 381,499
GFF3630
GFF3631 - hypothetical protein, at 381,502 to 381,693
GFF3631
GFF3632 - Transcriptional regulator SlyA, at 382,047 to 382,373
GFF3632
GFF3633 - Outer membrane lipoprotein pcp precursor, at 382,421 to 382,888
GFF3633
GFF3634 - Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-), at 383,160 to 384,281
GFF3634
Position (kb) 382
383 Strain fitness (log2 ratio) -1
0
1 at 381.535 kb on + strand, within GFF3631 at 381.566 kb on - strand, within GFF3631 at 381.729 kb on + strand at 381.795 kb on + strand at 381.816 kb on - strand at 381.816 kb on - strand at 382.129 kb on + strand, within GFF3632 at 382.208 kb on + strand, within GFF3632 at 382.263 kb on - strand, within GFF3632 at 382.386 kb on + strand at 382.411 kb on - strand at 382.411 kb on - strand at 382.493 kb on - strand, within GFF3633 at 382.757 kb on - strand, within GFF3633 at 382.765 kb on - strand, within GFF3633 at 382.765 kb on - strand, within GFF3633 at 382.875 kb on - strand at 382.890 kb on + strand at 382.932 kb on + strand at 382.935 kb on - strand at 382.939 kb on - strand at 382.943 kb on + strand at 382.945 kb on + strand at 383.010 kb on + strand at 383.105 kb on + strand at 383.106 kb on - strand at 383.117 kb on + strand at 383.146 kb on + strand at 383.309 kb on + strand, within GFF3634 at 383.331 kb on - strand, within GFF3634 at 383.493 kb on - strand, within GFF3634 at 383.513 kb on + strand, within GFF3634 at 383.648 kb on + strand, within GFF3634 at 383.648 kb on + strand, within GFF3634 at 383.735 kb on + strand, within GFF3634 at 383.736 kb on - strand, within GFF3634 at 383.736 kb on - strand, within GFF3634
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 381,535 + GFF3631 0.17 -0.2 381,566 - GFF3631 0.33 +0.2 381,729 + +0.1 381,795 + +0.1 381,816 - +0.7 381,816 - +0.4 382,129 + GFF3632 0.25 +0.1 382,208 + GFF3632 0.49 -0.2 382,263 - GFF3632 0.66 -0.6 382,386 + +0.3 382,411 - -0.5 382,411 - -0.5 382,493 - GFF3633 0.15 -1.3 382,757 - GFF3633 0.72 -0.2 382,765 - GFF3633 0.74 +0.5 382,765 - GFF3633 0.74 -0.5 382,875 - +0.3 382,890 + -0.0 382,932 + -1.1 382,935 - -0.1 382,939 - +0.1 382,943 + -0.6 382,945 + +0.3 383,010 + -0.0 383,105 + +0.0 383,106 - +0.3 383,117 + +0.5 383,146 + +0.3 383,309 + GFF3634 0.13 -0.1 383,331 - GFF3634 0.15 -0.2 383,493 - GFF3634 0.30 +0.5 383,513 + GFF3634 0.31 +1.0 383,648 + GFF3634 0.43 +0.2 383,648 + GFF3634 0.43 -0.0 383,735 + GFF3634 0.51 +0.5 383,736 - GFF3634 0.51 -0.2 383,736 - GFF3634 0.51 -0.4
Or see this region's nucleotide sequence