Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3625 and GFF3626 are separated by 189 nucleotides GFF3626 and GFF3627 are separated by 50 nucleotides GFF3627 and GFF3628 are separated by 79 nucleotides GFF3628 and GFF3629 overlap by 25 nucleotides
GFF3625 - Transcriptional regulator, TetR family, at 376,135 to 376,734
GFF3625
GFF3626 - FIG00553873: hypothetical protein, at 376,924 to 377,076
GFF3626
GFF3627 - Putative aldo/keto reductase, at 377,127 to 378,023
GFF3627
GFF3628 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 378,103 to 378,624
GFF3628
GFF3629 - FIG01045166: hypothetical protein, at 378,600 to 380,639
GFF3629
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 376.245 kb on - strand, within GFF3625 at 376.535 kb on + strand, within GFF3625 at 376.671 kb on + strand, within GFF3625 at 376.746 kb on + strand at 376.793 kb on + strand at 377.091 kb on - strand at 377.105 kb on + strand at 377.210 kb on + strand at 377.211 kb on - strand at 377.268 kb on - strand, within GFF3627 at 377.422 kb on - strand, within GFF3627 at 377.444 kb on + strand, within GFF3627 at 377.487 kb on + strand, within GFF3627 at 377.487 kb on + strand, within GFF3627 at 377.713 kb on + strand, within GFF3627 at 377.713 kb on + strand, within GFF3627 at 377.723 kb on - strand, within GFF3627 at 377.849 kb on + strand, within GFF3627 at 377.865 kb on + strand, within GFF3627 at 378.449 kb on + strand, within GFF3628 at 378.459 kb on + strand, within GFF3628 at 378.460 kb on - strand, within GFF3628 at 378.756 kb on + strand at 378.766 kb on - strand at 378.830 kb on + strand, within GFF3629 at 378.831 kb on - strand, within GFF3629 at 378.831 kb on - strand, within GFF3629 at 378.930 kb on + strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.988 kb on + strand, within GFF3629 at 378.989 kb on - strand, within GFF3629 at 378.989 kb on - strand, within GFF3629
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 376,245 - GFF3625 0.18 +0.2 376,535 + GFF3625 0.67 -0.8 376,671 + GFF3625 0.89 -0.0 376,746 + -0.3 376,793 + -0.6 377,091 - -0.2 377,105 + +0.4 377,210 + -0.6 377,211 - +0.6 377,268 - GFF3627 0.16 -0.3 377,422 - GFF3627 0.33 +0.4 377,444 + GFF3627 0.35 +0.3 377,487 + GFF3627 0.40 -0.1 377,487 + GFF3627 0.40 -1.9 377,713 + GFF3627 0.65 +0.2 377,713 + GFF3627 0.65 -0.4 377,723 - GFF3627 0.66 +1.0 377,849 + GFF3627 0.80 +0.5 377,865 + GFF3627 0.82 +0.2 378,449 + GFF3628 0.66 +0.9 378,459 + GFF3628 0.68 +0.3 378,460 - GFF3628 0.68 +1.0 378,756 + -0.0 378,766 - +0.3 378,830 + GFF3629 0.11 +0.1 378,831 - GFF3629 0.11 +0.0 378,831 - GFF3629 0.11 -1.9 378,930 + GFF3629 0.16 +0.2 378,931 - GFF3629 0.16 -0.0 378,931 - GFF3629 0.16 +0.1 378,931 - GFF3629 0.16 +0.8 378,988 + GFF3629 0.19 +0.3 378,989 - GFF3629 0.19 +0.2 378,989 - GFF3629 0.19 +0.1
Or see this region's nucleotide sequence