Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3578 and GFF3579 are separated by 6 nucleotides GFF3579 and GFF3580 are separated by 109 nucleotides GFF3580 and GFF3581 are separated by 178 nucleotides GFF3581 and GFF3582 are separated by 30 nucleotides
GFF3578 - COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA, at 336,181 to 337,062
GFF3578
GFF3579 - hypothetical protein, at 337,069 to 337,203
GFF3579
GFF3580 - Transcriptional regulator, MerR family, associated with photolyase, at 337,313 to 338,041
GFF3580
GFF3581 - Secretion system regulator of DegU/UvrY/BvgA type, at 338,220 to 338,858
GFF3581
GFF3582 - Secretion system regulator: Sensor component (EC 2.7.3.-) (EC 2.7.1.40), at 338,889 to 341,651
GFF3582
Position (kb) 337
338
339 Strain fitness (log2 ratio) -1
0
1 at 336.445 kb on - strand, within GFF3578 at 336.671 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.837 kb on + strand, within GFF3578 at 337.069 kb on - strand at 337.134 kb on + strand, within GFF3579 at 337.599 kb on + strand, within GFF3580 at 337.686 kb on - strand, within GFF3580 at 337.922 kb on + strand, within GFF3580 at 337.923 kb on - strand, within GFF3580 at 337.943 kb on - strand, within GFF3580 at 338.010 kb on - strand at 338.073 kb on - strand at 338.075 kb on - strand at 338.075 kb on - strand at 338.094 kb on + strand at 338.105 kb on + strand at 338.199 kb on - strand at 338.589 kb on - strand, within GFF3581 at 338.590 kb on + strand, within GFF3581 at 338.590 kb on + strand, within GFF3581 at 338.603 kb on - strand, within GFF3581 at 338.646 kb on + strand, within GFF3581 at 338.688 kb on - strand, within GFF3581 at 338.704 kb on - strand, within GFF3581 at 338.704 kb on - strand, within GFF3581 at 338.791 kb on - strand, within GFF3581
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 336,445 - GFF3578 0.30 -0.5 336,671 - GFF3578 0.56 +0.1 336,789 - GFF3578 0.69 +0.3 336,789 - GFF3578 0.69 +0.3 336,837 + GFF3578 0.74 -0.1 337,069 - +0.2 337,134 + GFF3579 0.48 -0.6 337,599 + GFF3580 0.39 +0.3 337,686 - GFF3580 0.51 +0.5 337,922 + GFF3580 0.84 +0.2 337,923 - GFF3580 0.84 +0.9 337,943 - GFF3580 0.86 +0.3 338,010 - +0.3 338,073 - +0.8 338,075 - +1.2 338,075 - -0.0 338,094 + +1.1 338,105 + -0.2 338,199 - -0.3 338,589 - GFF3581 0.58 +0.1 338,590 + GFF3581 0.58 +0.2 338,590 + GFF3581 0.58 +0.4 338,603 - GFF3581 0.60 +0.2 338,646 + GFF3581 0.67 -1.0 338,688 - GFF3581 0.73 -0.0 338,704 - GFF3581 0.76 +0.6 338,704 - GFF3581 0.76 +1.5 338,791 - GFF3581 0.89 +0.3
Or see this region's nucleotide sequence