Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3531 and GFF3532 are separated by 76 nucleotides GFF3532 and GFF3533 are separated by 313 nucleotides GFF3533 and GFF3534 are separated by 61 nucleotides
GFF3531 - Vitamin B12 ABC transporter, ATPase component BtuD, at 283,259 to 283,996
GFF3531
GFF3532 - Probable lipoprotein nlpC precursor, at 284,073 to 284,537
GFF3532
GFF3533 - FIG00638687: hypothetical protein, at 284,851 to 285,564
GFF3533
GFF3534 - Selenoprotein O and cysteine-containing homologs, at 285,626 to 287,068
GFF3534
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1 at 284.213 kb on + strand, within GFF3532 at 284.614 kb on - strand at 284.618 kb on - strand at 285.084 kb on + strand, within GFF3533 at 285.137 kb on + strand, within GFF3533 at 285.457 kb on - strand, within GFF3533 at 285.495 kb on + strand at 285.604 kb on + strand at 285.604 kb on + strand at 285.605 kb on - strand at 285.675 kb on - strand at 285.687 kb on + strand at 285.810 kb on + strand, within GFF3534 at 285.810 kb on + strand, within GFF3534 at 285.811 kb on - strand, within GFF3534 at 285.811 kb on - strand, within GFF3534 at 285.840 kb on + strand, within GFF3534 at 285.840 kb on + strand, within GFF3534 at 285.842 kb on + strand, within GFF3534 at 285.842 kb on + strand, within GFF3534 at 285.843 kb on - strand, within GFF3534 at 285.963 kb on + strand, within GFF3534 at 285.971 kb on + strand, within GFF3534 at 286.046 kb on + strand, within GFF3534 at 286.063 kb on + strand, within GFF3534 at 286.079 kb on - strand, within GFF3534 at 286.188 kb on - strand, within GFF3534 at 286.400 kb on + strand, within GFF3534 at 286.400 kb on + strand, within GFF3534 at 286.428 kb on - strand, within GFF3534
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 284,213 + GFF3532 0.30 +0.1 284,614 - -0.1 284,618 - +0.0 285,084 + GFF3533 0.33 -1.0 285,137 + GFF3533 0.40 -2.2 285,457 - GFF3533 0.85 -0.5 285,495 + -1.6 285,604 + -0.4 285,604 + +0.7 285,605 - +0.8 285,675 - +0.6 285,687 + +0.0 285,810 + GFF3534 0.13 +0.6 285,810 + GFF3534 0.13 -0.2 285,811 - GFF3534 0.13 -0.2 285,811 - GFF3534 0.13 -0.5 285,840 + GFF3534 0.15 -0.1 285,840 + GFF3534 0.15 +0.0 285,842 + GFF3534 0.15 -0.3 285,842 + GFF3534 0.15 -0.1 285,843 - GFF3534 0.15 -0.9 285,963 + GFF3534 0.23 +0.2 285,971 + GFF3534 0.24 +0.2 286,046 + GFF3534 0.29 +0.6 286,063 + GFF3534 0.30 +0.2 286,079 - GFF3534 0.31 +0.4 286,188 - GFF3534 0.39 -0.8 286,400 + GFF3534 0.54 -0.2 286,400 + GFF3534 0.54 -0.1 286,428 - GFF3534 0.56 -0.3
Or see this region's nucleotide sequence