Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3493 and GFF3494 overlap by 4 nucleotides GFF3494 and GFF3495 overlap by 4 nucleotides
GFF3493 - Arginine N-succinyltransferase (EC 2.3.1.109), at 245,464 to 246,498
GFF3493
GFF3494 - Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), at 246,495 to 247,973
GFF3494
GFF3495 - Succinylarginine dihydrolase (EC 3.5.3.23), at 247,970 to 249,313
GFF3495
Position (kb) 246
247
248 Strain fitness (log2 ratio) -1
0
1 at 245.635 kb on + strand, within GFF3493 at 245.639 kb on + strand, within GFF3493 at 245.639 kb on + strand, within GFF3493 at 245.640 kb on - strand, within GFF3493 at 245.640 kb on - strand, within GFF3493 at 245.724 kb on + strand, within GFF3493 at 245.724 kb on + strand, within GFF3493 at 245.728 kb on + strand, within GFF3493 at 245.729 kb on - strand, within GFF3493 at 245.729 kb on - strand, within GFF3493 at 245.729 kb on - strand, within GFF3493 at 245.729 kb on - strand, within GFF3493 at 245.771 kb on + strand, within GFF3493 at 245.771 kb on + strand, within GFF3493 at 245.772 kb on - strand, within GFF3493 at 245.776 kb on - strand, within GFF3493 at 245.792 kb on + strand, within GFF3493 at 245.875 kb on + strand, within GFF3493 at 245.899 kb on - strand, within GFF3493 at 246.097 kb on - strand, within GFF3493 at 246.100 kb on + strand, within GFF3493 at 246.209 kb on - strand, within GFF3493 at 246.209 kb on - strand, within GFF3493 at 246.250 kb on - strand, within GFF3493 at 246.508 kb on + strand at 246.575 kb on - strand at 246.575 kb on - strand at 246.719 kb on + strand, within GFF3494 at 246.822 kb on - strand, within GFF3494 at 247.775 kb on + strand, within GFF3494 at 247.916 kb on - strand at 247.933 kb on + strand at 248.011 kb on + strand at 248.011 kb on + strand at 248.022 kb on - strand at 248.365 kb on - strand, within GFF3495 at 248.425 kb on - strand, within GFF3495 at 248.877 kb on - strand, within GFF3495 at 248.884 kb on + strand, within GFF3495 at 248.925 kb on + strand, within GFF3495
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 245,635 + GFF3493 0.17 +0.6 245,639 + GFF3493 0.17 -0.3 245,639 + GFF3493 0.17 -0.0 245,640 - GFF3493 0.17 -0.3 245,640 - GFF3493 0.17 -0.2 245,724 + GFF3493 0.25 -0.5 245,724 + GFF3493 0.25 -0.0 245,728 + GFF3493 0.26 -0.0 245,729 - GFF3493 0.26 -0.7 245,729 - GFF3493 0.26 -1.0 245,729 - GFF3493 0.26 -0.4 245,729 - GFF3493 0.26 +0.5 245,771 + GFF3493 0.30 -0.1 245,771 + GFF3493 0.30 -0.1 245,772 - GFF3493 0.30 +0.1 245,776 - GFF3493 0.30 +0.5 245,792 + GFF3493 0.32 +0.1 245,875 + GFF3493 0.40 -0.4 245,899 - GFF3493 0.42 -1.0 246,097 - GFF3493 0.61 +1.5 246,100 + GFF3493 0.61 +0.2 246,209 - GFF3493 0.72 +1.5 246,209 - GFF3493 0.72 +0.3 246,250 - GFF3493 0.76 -0.0 246,508 + -0.9 246,575 - -0.1 246,575 - +0.4 246,719 + GFF3494 0.15 +0.4 246,822 - GFF3494 0.22 +0.2 247,775 + GFF3494 0.87 +0.9 247,916 - +0.5 247,933 + +0.6 248,011 + -0.0 248,011 + +0.0 248,022 - +1.0 248,365 - GFF3495 0.29 +0.5 248,425 - GFF3495 0.34 +0.1 248,877 - GFF3495 0.67 +0.6 248,884 + GFF3495 0.68 -0.3 248,925 + GFF3495 0.71 -0.0
Or see this region's nucleotide sequence