Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF348

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF346 and GFF347 are separated by 81 nucleotidesGFF347 and GFF637 are separated by 113 nucleotidesGFF637 and GFF348 are separated by 287 nucleotidesGFF348 and GFF349 are separated by 11 nucleotides GFF346 - FIG01046176: hypothetical protein, at 63,747 to 64,091 GFF346 GFF347 - hypothetical protein, at 64,173 to 64,298 GFF347 GFF637 - tRNA-SeC(p)-TCA, at 64,412 to 64,502 GFF637 GFF348 - Xyloside transporter XynT, at 64,790 to 66,172 GFF348 GFF349 - Alpha-xylosidase (EC 3.2.1.-), at 66,184 to 68,502 GFF349 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1at 63.877 kb on + strand, within GFF346at 63.937 kb on - strand, within GFF346at 63.943 kb on + strand, within GFF346at 63.944 kb on - strand, within GFF346at 64.013 kb on + strand, within GFF346at 64.062 kb on + strandat 64.063 kb on - strandat 64.118 kb on - strandat 64.145 kb on - strandat 64.242 kb on - strand, within GFF347at 64.517 kb on - strandat 64.537 kb on + strandat 64.537 kb on + strandat 64.538 kb on - strandat 64.538 kb on - strandat 64.538 kb on - strandat 64.541 kb on + strandat 64.715 kb on + strandat 64.716 kb on - strandat 64.760 kb on - strandat 64.789 kb on - strandat 64.881 kb on - strandat 64.882 kb on + strandat 64.981 kb on + strand, within GFF348at 64.982 kb on - strand, within GFF348at 65.081 kb on + strand, within GFF348at 65.081 kb on + strand, within GFF348at 65.135 kb on + strand, within GFF348at 65.156 kb on + strand, within GFF348at 65.157 kb on - strand, within GFF348at 65.157 kb on - strand, within GFF348at 65.178 kb on - strand, within GFF348at 65.196 kb on + strand, within GFF348at 65.196 kb on + strand, within GFF348at 65.199 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.222 kb on - strand, within GFF348at 65.432 kb on - strand, within GFF348at 65.510 kb on - strand, within GFF348at 65.546 kb on + strand, within GFF348at 65.547 kb on - strand, within GFF348at 65.547 kb on - strand, within GFF348at 65.603 kb on + strand, within GFF348at 65.603 kb on + strand, within GFF348at 65.604 kb on - strand, within GFF348at 65.778 kb on + strand, within GFF348at 65.778 kb on + strand, within GFF348at 66.019 kb on + strand, within GFF348at 66.062 kb on - strandat 66.071 kb on + strandat 66.170 kb on + strandat 66.184 kb on - strandat 66.225 kb on + strandat 66.287 kb on - strandat 66.378 kb on - strandat 66.568 kb on - strand, within GFF349at 66.628 kb on + strand, within GFF349at 66.629 kb on - strand, within GFF349at 66.763 kb on + strand, within GFF349at 66.764 kb on - strand, within GFF349at 66.764 kb on - strand, within GFF349at 66.772 kb on - strand, within GFF349at 66.781 kb on + strand, within GFF349at 66.781 kb on + strand, within GFF349at 66.782 kb on - strand, within GFF349at 66.889 kb on + strand, within GFF349at 66.890 kb on - strand, within GFF349at 66.899 kb on - strand, within GFF349at 66.944 kb on - strand, within GFF349

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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63,877 + GFF346 0.38 +0.6
63,937 - GFF346 0.55 -0.0
63,943 + GFF346 0.57 -0.0
63,944 - GFF346 0.57 +0.1
64,013 + GFF346 0.77 +0.1
64,062 + +0.3
64,063 - -0.5
64,118 - -0.4
64,145 - -0.1
64,242 - GFF347 0.55 -0.5
64,517 - -0.1
64,537 + -0.6
64,537 + -0.4
64,538 - -0.5
64,538 - -0.4
64,538 - -0.1
64,541 + -0.3
64,715 + -0.6
64,716 - +0.1
64,760 - +0.1
64,789 - +0.3
64,881 - +0.4
64,882 + -0.2
64,981 + GFF348 0.14 -0.0
64,982 - GFF348 0.14 -0.7
65,081 + GFF348 0.21 +0.1
65,081 + GFF348 0.21 -0.2
65,135 + GFF348 0.25 +0.3
65,156 + GFF348 0.26 +0.2
65,157 - GFF348 0.27 +1.2
65,157 - GFF348 0.27 -1.9
65,178 - GFF348 0.28 +0.3
65,196 + GFF348 0.29 +0.5
65,196 + GFF348 0.29 -0.1
65,199 + GFF348 0.30 +0.5
65,221 + GFF348 0.31 -0.8
65,221 + GFF348 0.31 -0.1
65,221 + GFF348 0.31 -0.2
65,222 - GFF348 0.31 +0.8
65,432 - GFF348 0.46 +0.2
65,510 - GFF348 0.52 +0.2
65,546 + GFF348 0.55 +0.8
65,547 - GFF348 0.55 +1.3
65,547 - GFF348 0.55 +0.2
65,603 + GFF348 0.59 +0.2
65,603 + GFF348 0.59 +0.4
65,604 - GFF348 0.59 +0.3
65,778 + GFF348 0.71 +0.1
65,778 + GFF348 0.71 +0.0
66,019 + GFF348 0.89 -0.8
66,062 - -1.4
66,071 + -0.0
66,170 + -0.5
66,184 - +0.2
66,225 + +0.4
66,287 - +0.1
66,378 - +0.2
66,568 - GFF349 0.17 -0.6
66,628 + GFF349 0.19 -0.1
66,629 - GFF349 0.19 -0.0
66,763 + GFF349 0.25 -0.0
66,764 - GFF349 0.25 +0.1
66,764 - GFF349 0.25 +0.4
66,772 - GFF349 0.25 +0.3
66,781 + GFF349 0.26 +1.0
66,781 + GFF349 0.26 -0.2
66,782 - GFF349 0.26 -0.2
66,889 + GFF349 0.30 -1.5
66,890 - GFF349 0.30 -0.3
66,899 - GFF349 0.31 -1.6
66,944 - GFF349 0.33 +0.3

Or see this region's nucleotide sequence