Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3461 and GFF3462 are separated by 254 nucleotides GFF3462 and GFF3463 are separated by 68 nucleotides GFF3463 and GFF3464 overlap by 15 nucleotides GFF3464 and GFF3465 are separated by 118 nucleotides
GFF3461 - hypothetical protein, at 215,501 to 215,617
GFF3461
GFF3462 - FIG00638802: hypothetical protein, at 215,872 to 216,123
GFF3462
GFF3463 - FIG00638667: hypothetical protein, at 216,192 to 216,503
GFF3463
GFF3464 - FIG00638254: hypothetical protein, at 216,489 to 216,836
GFF3464
GFF3465 - hypothetical protein, at 216,955 to 218,139
GFF3465
Position (kb) 216
217 Strain fitness (log2 ratio) -1
0
1 at 215.537 kb on + strand, within GFF3461 at 215.680 kb on - strand at 215.683 kb on - strand at 215.711 kb on - strand at 215.860 kb on + strand at 215.903 kb on + strand, within GFF3462 at 216.150 kb on + strand at 216.223 kb on + strand at 216.281 kb on - strand, within GFF3463 at 216.539 kb on + strand, within GFF3464 at 216.553 kb on + strand, within GFF3464 at 216.727 kb on + strand, within GFF3464 at 216.727 kb on + strand, within GFF3464 at 216.953 kb on - strand at 216.953 kb on - strand at 216.956 kb on + strand at 217.040 kb on - strand at 217.223 kb on - strand, within GFF3465 at 217.429 kb on + strand, within GFF3465 at 217.548 kb on + strand, within GFF3465 at 217.548 kb on + strand, within GFF3465
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 215,537 + GFF3461 0.31 +0.2 215,680 - +0.1 215,683 - -0.2 215,711 - -1.6 215,860 + +0.5 215,903 + GFF3462 0.12 +0.1 216,150 + +0.1 216,223 + +0.8 216,281 - GFF3463 0.29 +0.5 216,539 + GFF3464 0.14 +0.8 216,553 + GFF3464 0.18 +0.1 216,727 + GFF3464 0.68 +0.2 216,727 + GFF3464 0.68 +0.3 216,953 - -0.5 216,953 - -1.6 216,956 + -0.6 217,040 - -1.3 217,223 - GFF3465 0.23 -1.1 217,429 + GFF3465 0.40 -0.0 217,548 + GFF3465 0.50 -0.6 217,548 + GFF3465 0.50 +0.5
Or see this region's nucleotide sequence