Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF343 and GFF344 are separated by 186 nucleotides GFF344 and GFF345 overlap by 1 nucleotides GFF345 and GFF346 are separated by 677 nucleotides
GFF343 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 60,308 to 61,345
GFF343
GFF344 - FIG01046146: hypothetical protein, at 61,532 to 61,879
GFF344
GFF345 - ATP binding protein, at 61,879 to 63,069
GFF345
GFF346 - FIG01046176: hypothetical protein, at 63,747 to 64,091
GFF346
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.088 kb on + strand, within GFF343 at 61.118 kb on + strand, within GFF343 at 61.119 kb on - strand, within GFF343 at 61.164 kb on + strand, within GFF343 at 61.165 kb on - strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.175 kb on - strand, within GFF343 at 61.186 kb on + strand, within GFF343 at 61.333 kb on - strand at 61.360 kb on + strand at 61.361 kb on - strand at 61.391 kb on + strand at 61.420 kb on - strand at 61.483 kb on + strand at 61.555 kb on + strand at 61.556 kb on - strand at 61.664 kb on + strand, within GFF344 at 61.665 kb on - strand, within GFF344 at 61.665 kb on - strand, within GFF344 at 61.771 kb on - strand, within GFF344 at 61.892 kb on + strand at 61.893 kb on - strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.914 kb on + strand at 61.915 kb on - strand at 61.947 kb on + strand at 62.020 kb on - strand, within GFF345 at 62.028 kb on + strand, within GFF345 at 62.068 kb on - strand, within GFF345 at 62.101 kb on - strand, within GFF345 at 62.367 kb on + strand, within GFF345 at 62.368 kb on - strand, within GFF345 at 62.368 kb on - strand, within GFF345 at 62.368 kb on - strand, within GFF345 at 62.469 kb on + strand, within GFF345 at 62.470 kb on - strand, within GFF345 at 62.471 kb on + strand, within GFF345 at 62.471 kb on + strand, within GFF345 at 62.618 kb on + strand, within GFF345 at 62.618 kb on + strand, within GFF345 at 62.715 kb on + strand, within GFF345 at 62.715 kb on + strand, within GFF345 at 62.854 kb on + strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.994 kb on + strand at 62.995 kb on - strand at 63.012 kb on + strand at 63.071 kb on - strand at 63.103 kb on + strand at 63.103 kb on + strand at 63.104 kb on - strand at 63.104 kb on - strand at 63.104 kb on - strand at 63.106 kb on + strand at 63.367 kb on + strand at 63.382 kb on - strand at 63.403 kb on - strand at 63.416 kb on - strand at 63.424 kb on + strand at 63.425 kb on - strand at 63.425 kb on - strand at 63.586 kb on + strand at 63.589 kb on + strand at 63.628 kb on - strand at 63.877 kb on + strand, within GFF346 at 63.937 kb on - strand, within GFF346 at 63.943 kb on + strand, within GFF346 at 63.944 kb on - strand, within GFF346 at 64.013 kb on + strand, within GFF346 at 64.062 kb on + strand at 64.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 61,088 + GFF343 0.75 -0.0 61,118 + GFF343 0.78 +0.4 61,119 - GFF343 0.78 -1.5 61,164 + GFF343 0.82 +0.0 61,165 - GFF343 0.83 -0.7 61,174 + GFF343 0.83 -0.1 61,174 + GFF343 0.83 -0.3 61,174 + GFF343 0.83 +0.2 61,175 - GFF343 0.84 -1.8 61,186 + GFF343 0.85 -0.2 61,333 - -0.7 61,360 + -0.1 61,361 - +0.2 61,391 + +0.0 61,420 - +0.1 61,483 + +0.0 61,555 + +0.6 61,556 - -0.6 61,664 + GFF344 0.38 +0.1 61,665 - GFF344 0.38 +0.3 61,665 - GFF344 0.38 +0.2 61,771 - GFF344 0.69 -0.1 61,892 + +0.2 61,893 - -1.0 61,900 + -0.7 61,900 + -0.9 61,914 + +0.4 61,915 - +0.4 61,947 + -0.9 62,020 - GFF345 0.12 +0.0 62,028 + GFF345 0.13 -0.1 62,068 - GFF345 0.16 -0.7 62,101 - GFF345 0.19 -0.6 62,367 + GFF345 0.41 -1.2 62,368 - GFF345 0.41 +0.5 62,368 - GFF345 0.41 +0.2 62,368 - GFF345 0.41 -1.1 62,469 + GFF345 0.50 -0.1 62,470 - GFF345 0.50 -0.5 62,471 + GFF345 0.50 -0.1 62,471 + GFF345 0.50 -0.8 62,618 + GFF345 0.62 +0.4 62,618 + GFF345 0.62 -0.5 62,715 + GFF345 0.70 +0.1 62,715 + GFF345 0.70 +0.7 62,854 + GFF345 0.82 +0.2 62,855 - GFF345 0.82 -0.2 62,855 - GFF345 0.82 +0.0 62,855 - GFF345 0.82 -0.4 62,855 - GFF345 0.82 -0.2 62,994 + +0.3 62,995 - +0.5 63,012 + -0.6 63,071 - -0.3 63,103 + -0.5 63,103 + +0.3 63,104 - -0.4 63,104 - -0.1 63,104 - -0.0 63,106 + +0.2 63,367 + +0.5 63,382 - +0.3 63,403 - -0.4 63,416 - -0.0 63,424 + -0.4 63,425 - -0.0 63,425 - -0.4 63,586 + +0.2 63,589 + +0.3 63,628 - -0.2 63,877 + GFF346 0.38 +0.6 63,937 - GFF346 0.55 -0.0 63,943 + GFF346 0.57 -0.0 63,944 - GFF346 0.57 +0.1 64,013 + GFF346 0.77 +0.1 64,062 + +0.3 64,063 - -0.5
Or see this region's nucleotide sequence